SMTL ID : 4kvo.4 (3 other biounits)

The NatA (Naa10p/Naa15p) amino-terminal acetyltrasferase complex bound to AcCoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: Q.491, T.525, D.529 Chain B: Q.27, L.28, K.29 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.491, A:D.529, B:K.29

13 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: F.535, R.539 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: S.123, L.131, R.135, A.151, F.538 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Y.162, A.163, K.201 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: E.215, V.218, R.221, F.224 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: Q.263, E.269, K.274, W.281, K.305 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: R.422, K.453, K.456, Y.457 Ligands: CL.8, CL.9 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: K.425, K.456 Ligands: CL.7, CL.9 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.422 Ligands: CL.7, CL.8 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: M.496, R.515, T.518 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: K.209, K.237 Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain B: V.100 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain A: R.448 Chain B: L.19 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 4 residues within 4Å: Chain A: R.221, L.225, R.251 Chain B: R.97 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.97 Salt bridges: A:R.221, A:R.251

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.13: 23 residues within 4Å: Chain B: N.21, L.22, E.24, S.75, V.76, S.77, V.78, R.83, H.84, L.85, G.86, L.87, A.88, K.89, H.111, V.112, N.116, R.117, A.118, H.121, L.122, Y.123, T.126 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.22, B:V.78, B:A.88 Hydrogen bonds: B:V.76, B:V.76, B:V.78, B:R.83, B:H.84, B:L.85, B:G.86, B:G.86, B:L.87, B:A.88, B:K.89, B:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liszczak, G. et al., Molecular basis for N-terminal acetylation by the heterodimeric NatA complex. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-07-31

Peptides

N-terminal acetyltransferase A complex subunit nat1: A
N-terminal acetyltransferase A complex catalytic subunit ard1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

N-terminal acetyltransferase A complex subunit nat1

N-terminal acetyltransferase A complex catalytic subunit ard1

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