SMTL ID : 4lh3.1

Structure of mouse 1-Pyrroline-5-Carboxylate Dehydrogenase (ALDH4A1) complexed with glutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 6 residues within 4Å: Chain A: T.61, A.63, W.74, I.78, Y.80, K.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.80, A:K.93 1PE.3: 5 residues within 4Å: Chain B: A.63, W.74, I.78, Y.80, K.93 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.80, B:K.93 Water bridges: B:T.61, B:A.63

2 x GUA: GLUTARIC ACID(Non-covalent)

GUA.2: 10 residues within 4Å: Chain A: N.211, F.212, I.215, K.347, C.348, S.349, T.511, G.512, S.513, F.520 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.212, A:F.520, A:F.520 Hydrogen bonds: A:N.211, A:C.348, A:S.349, A:G.512, A:S.513, A:S.513 GUA.4: 10 residues within 4Å: Chain B: N.211, F.212, I.215, K.347, C.348, S.349, T.511, G.512, S.513, F.520 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.212, B:F.520, B:F.520 Hydrogen bonds: B:N.211, B:C.348, B:S.349, B:G.512, B:S.513

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pemberton, T.A. et al., Structural basis of substrate selectivity of Delta (1)-pyrroline-5-carboxylate dehydrogenase (ALDH4A1): Semialdehyde chain length. Arch.Biochem.Biophys. (2013)

Release Date

2013-08-28

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

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