- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x GLY: GLYCINE(Non-covalent)
- 3 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.5: 7 residues within 4Å:- Chain A: S.523, F.861, G.862, F.863, E.888, R.891, W.948
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.888, A:E.888
BCT.6: 7 residues within 4Å:- Chain A: S.82, Y.84, G.85
- Chain B: I.112, E.446, T.447, T.449
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.446, A:S.82, A:S.82
BCT.19: 7 residues within 4Å:- Chain B: S.523, F.861, G.862, F.863, E.888, R.891, W.948
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.861, B:E.888
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.7: 4 residues within 4Å:- Chain A: D.581, K.745, S.746, H.747
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.746, A:H.747
- Water bridges: A:D.718, A:H.747
- Salt bridges: A:H.747
PO4.8: 4 residues within 4Å:- Chain A: Q.76, L.77, P.78, W.573
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.76, A:W.573
PO4.9: 6 residues within 4Å:- Chain A: T.151, D.155, D.494, S.973, C.974, E.975
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.494, A:S.973, A:E.975
- Water bridges: A:Q.493, A:Q.493
PO4.20: 4 residues within 4Å:- Chain B: D.581, K.745, S.746, H.747
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.746, B:H.747
- Water bridges: B:D.718
- Salt bridges: B:H.747
PO4.21: 4 residues within 4Å:- Chain B: Q.76, L.77, P.78, W.573
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.76, B:Q.76
PO4.22: 6 residues within 4Å:- Chain B: T.151, D.155, D.494, S.973, C.974, E.975
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.494, B:S.973, B:E.975
- Water bridges: B:D.155, B:D.155, B:D.155, B:Q.493
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 5 residues within 4Å:- Chain A: D.894, A.898, P.945, A.946, P.947
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain A: P.294, T.544, W.545, P.546, G.549, K.550
Ligand excluded by PLIPEDO.12: 4 residues within 4Å:- Chain A: F.71, P.72, R.73, S.74
Ligand excluded by PLIPEDO.13: 5 residues within 4Å:- Chain A: F.71, P.72, R.73, R.711, D.714
Ligand excluded by PLIPEDO.14: 3 residues within 4Å:- Chain A: D.252, H.255, G.280
Ligand excluded by PLIPEDO.15: 3 residues within 4Å:- Chain A: Q.797, T.800, K.801
Ligand excluded by PLIPEDO.17: 7 residues within 4Å:- Chain A: L.52, N.811, A.814, E.818, R.826, E.830, L.831
Ligand excluded by PLIPEDO.23: 6 residues within 4Å:- Chain B: P.294, T.544, W.545, P.546, G.549, K.550
Ligand excluded by PLIPEDO.24: 6 residues within 4Å:- Chain B: E.42, Q.45, L.49, T.56, L.57, K.801
Ligand excluded by PLIPEDO.25: 4 residues within 4Å:- Chain B: L.52, K.815, E.830, L.831
Ligand excluded by PLIPEDO.26: 5 residues within 4Å:- Chain B: D.894, A.898, P.945, A.946, P.947
Ligand excluded by PLIPEDO.27: 3 residues within 4Å:- Chain B: S.229, H.257, Q.258
Ligand excluded by PLIPEDO.28: 3 residues within 4Å:- Chain B: P.753, R.754, T.755
Ligand excluded by PLIPEDO.29: 8 residues within 4Å:- Chain B: I.69, R.70, F.71, P.72, C.710, R.711, D.714, F.715
Ligand excluded by PLIPEDO.30: 3 residues within 4Å:- Chain B: E.571, T.755, Y.778
Ligand excluded by PLIPEDO.31: 3 residues within 4Å:- Chain B: D.912, D.915, P.936
Ligand excluded by PLIP- 1 x BCN: BICINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem. (2013)
- Release Date
- 2013-10-16
- Peptides
- Glycine dehydrogenase [decarboxylating]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x GLY: GLYCINE(Non-covalent)
- 3 x BCT: BICARBONATE ION(Non-functional Binders)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BCN: BICINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem. (2013)
- Release Date
- 2013-10-16
- Peptides
- Glycine dehydrogenase [decarboxylating]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B