SMTL ID : 4ll7.2 (3 other biounits)

Structure of She3p amino terminus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

6 x DY: DYSPROSIUM ION(Non-covalent)

DY.1: 1 residues within 4Å: Chain A: D.74 No protein-ligand interaction detected (PLIP) DY.2: 1 residues within 4Å: Chain A: E.62 No protein-ligand interaction detected (PLIP) DY.3: 1 residues within 4Å: Chain A: E.87 No protein-ligand interaction detected (PLIP) DY.10: 1 residues within 4Å: Chain B: D.74 No protein-ligand interaction detected (PLIP) DY.11: 1 residues within 4Å: Chain B: E.87 No protein-ligand interaction detected (PLIP) DY.12: 1 residues within 4Å: Chain B: E.62 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.81 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.81 SO4.5: 2 residues within 4Å: Chain A: R.63, K.64 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.63, A:K.64, A:K.64 Salt bridges: A:R.63, A:K.64 SO4.6: 2 residues within 4Å: Chain A: N.56, I.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.56 SO4.7: 4 residues within 4Å: Chain A: D.74, E.77, L.78, R.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.81 SO4.13: 1 residues within 4Å: Chain B: R.81 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.81 SO4.14: 2 residues within 4Å: Chain B: Q.85, K.88 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.85, B:Q.85 Salt bridges: B:K.88

2 x PT: PLATINUM (II) ION(Non-covalent)

PT.8: 1 residues within 4Å: Chain A: M.89 No protein-ligand interaction detected (PLIP) PT.15: 1 residues within 4Å: Chain B: N.54 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 4 residues within 4Å: Chain A: N.52, E.55, N.56, S.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.52, A:N.52, A:S.59, A:S.59 EDO.16: 4 residues within 4Å: Chain B: N.52, E.55, N.56, S.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.59, B:S.59 EDO.17: 2 residues within 4Å: Chain B: R.63, K.64 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.63, B:R.63, B:K.64, B:K.64

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.18: 2 residues within 4Å: Chain B: E.53, N.56 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.53, B:E.53, B:N.56 Hydrogen bonds: B:N.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, H. et al., Structure of a myosinbulletadaptor complex and pairing by cargo. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-02-12

Peptides

SWI5-dependent HO expression protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

SWI5-dependent HO expression protein 3

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