SMTL ID : 4ls7.1

Crystal structure of Bacillus subtilis beta-ketoacyl-ACP synthase II (FabF) in a non-covalent complex with cerulenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: N.314, A.315, H.316, E.362, S.407, N.408 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.314, A:A.315, A:E.362, A:S.407, A:N.408 K.2: 3 residues within 4Å: Chain A: K.220, L.222, D.240 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:K.220, A:L.222, H2O.2, H2O.3, H2O.6 K.6: 6 residues within 4Å: Chain B: N.314, A.315, H.316, E.362, S.407, N.408 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.314, B:A.315, B:E.362, B:S.407, B:N.408 K.7: 3 residues within 4Å: Chain B: K.220, L.222, D.240 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:K.220, B:L.222, B:D.240, H2O.16

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: V.169, R.193, D.195 Chain B: K.189, Y.273, G.274, S.275, D.302 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.189, B:S.275, B:D.302, A:R.193, A:R.193 GOL.5: 5 residues within 4Å: Chain A: L.24, V.34, D.35, D.101, Y.267 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.101 Water bridges: A:D.35, A:E.372 GOL.9: 3 residues within 4Å: Chain B: T.224, N.225, P.226 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.224, B:T.224 Water bridges: B:T.224 GOL.10: 6 residues within 4Å: Chain B: P.29, L.30, N.40, V.45, S.46, K.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.40, B:S.46

2 x 1X9: Cerulenin(Non-covalent)

1X9.4: 14 residues within 4Å: Chain A: G.121, I.122, A.176, C.177, E.205, S.212, F.216, H.316, T.318, H.353, L.355, L.410, G.411, F.412 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.122, A:A.176, A:F.216, A:F.216, A:L.355, A:F.412 Hydrogen bonds: A:C.177, A:F.412 Water bridges: A:T.318 1X9.8: 14 residues within 4Å: Chain A: M.151 Chain B: G.121, I.122, A.176, C.177, S.212, F.216, H.316, T.318, H.353, L.355, L.410, G.411, F.412 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.122, B:A.176, B:F.216, B:L.355, B:F.412 Hydrogen bonds: B:C.177, B:L.410, B:F.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trajtenberg, F. et al., Structural insights into bacterial resistance to cerulenin. Febs J. (2014)

Release Date

2014-04-02

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 2

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