SMTL ID : 4lv8.3 (2 other biounits)

Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.168, R.169, F.170, R.192, N.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.192, A:R.192 Water bridges: A:F.170 EDO.2: 4 residues within 4Å: Chain A: N.222, N.225, T.226, E.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.222, A:N.225, A:E.229 EDO.4: 4 residues within 4Å: Chain A: M.56, T.64, D.300, L.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.64, A:D.300, A:L.301 EDO.5: 6 residues within 4Å: Chain A: E.202, K.206, T.209, D.211, K.214, V.215 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.206, A:K.206, A:D.211, A:D.211 Water bridges: A:E.202, A:T.209 EDO.6: 5 residues within 4Å: Chain A: T.168, K.194, S.197, D.198, N.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.194, A:D.198, A:N.201 Water bridges: A:T.168

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 14 residues within 4Å: Chain A: E.87, T.88, G.89, S.90, G.91, K.92, S.93, S.94, T.112, K.194, D.196, S.241, N.242, K.243 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.89, A:S.90, A:G.91, A:K.92, A:S.93, A:S.93, A:S.94, A:S.94, A:T.112, A:K.194, A:K.194, A:S.241, A:N.242, A:N.242, A:K.243 Water bridges: A:N.104, A:T.112, A:E.116, A:D.136, A:S.197 Salt bridges: A:D.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reese, M.L. et al., Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI. To be Published

Release Date

2013-09-25

Peptides

Interferon-inducible GTPase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Interferon-inducible GTPase 1

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