SMTL ID : 4m7h.2 (1 other biounit)

Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.158, D.160, S.162, N.164 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.160, A:S.162, A:N.164, H2O.1, H2O.4 CA.4: 4 residues within 4Å: Chain B: D.158, D.160, S.162, N.164 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.160, B:S.162, B:N.164, H2O.7, H2O.10 CA.7: 4 residues within 4Å: Chain C: D.158, D.160, S.162, N.164 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.160, C:S.162, C:N.164, H2O.13, H2O.16 CA.10: 4 residues within 4Å: Chain D: D.158, D.160, S.162, N.164 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.160, D:S.162, D:N.164, H2O.19, H2O.22

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.34, Q.35, L.80, R.84 Chain C: H.86, S.121, V.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.35, A:Q.35 GOL.5: 7 residues within 4Å: Chain B: F.34, Q.35, L.80, R.84 Chain D: H.86, S.121, V.122 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.35, B:Q.35 GOL.8: 7 residues within 4Å: Chain B: H.86, S.121, V.122 Chain C: F.34, Q.35, L.80, R.84 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.35, C:Q.35 GOL.11: 7 residues within 4Å: Chain A: H.86, S.121, V.122 Chain D: F.34, Q.35, L.80, R.84 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.35, D:Q.35

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: F.61, R.62, G.63, A.66, K.155 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.63 Water bridges: A:N.59, A:R.62, A:R.62 Salt bridges: A:R.62, A:K.155 SO4.6: 5 residues within 4Å: Chain B: F.61, R.62, G.63, A.66, K.155 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.63 Water bridges: B:N.59, B:R.62, B:R.62 Salt bridges: B:R.62, B:K.155 SO4.9: 5 residues within 4Å: Chain C: F.61, R.62, G.63, A.66, K.155 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.63 Water bridges: C:N.59, C:R.62, C:R.62 Salt bridges: C:R.62, C:K.155 SO4.12: 5 residues within 4Å: Chain D: F.61, R.62, G.63, A.66, K.155 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.63 Water bridges: D:N.59, D:R.62, D:R.62 Salt bridges: D:R.62, D:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shrive, A.K. et al., Crystal Structure of the Tetrameric Fibrinogen-like Recognition Domain of Fibrinogen C Domain Containing 1 (FIBCD1) Protein. J.Biol.Chem. (2014)

Release Date

2013-12-11

Peptides

Fibrinogen C domain-containing protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

Fibrinogen C domain-containing protein 1

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