- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.158, D.160, S.162, N.164
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.160, A:S.162, A:N.164, H2O.1, H2O.4
CA.8: 4 residues within 4Å:- Chain B: D.158, D.160, S.162, N.164
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.160, B:S.162, B:N.164, H2O.6, H2O.9
CA.14: 4 residues within 4Å:- Chain C: D.158, D.160, S.162, N.164
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.160, C:S.162, C:N.164, H2O.10, H2O.13
CA.20: 4 residues within 4Å:- Chain D: D.158, D.160, S.162, N.164
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.160, D:S.162, D:N.164, H2O.15, H2O.18
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: F.61, R.62, G.63, A.66, K.155
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.63
- Water bridges: A:A.66
- Salt bridges: A:R.62, A:K.155
SO4.4: 5 residues within 4Å:- Chain A: K.146, R.177, N.178, C.179, H.180
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.178, A:C.179, A:H.180, A:T.181
SO4.9: 5 residues within 4Å:- Chain B: F.61, R.62, G.63, A.66, K.155
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.63
- Water bridges: B:A.66
- Salt bridges: B:R.62, B:K.155
SO4.10: 5 residues within 4Å:- Chain B: K.146, R.177, N.178, C.179, H.180
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.178, B:C.179, B:H.180, B:T.181
SO4.15: 5 residues within 4Å:- Chain C: F.61, R.62, G.63, A.66, K.155
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.63
- Water bridges: C:A.66
- Salt bridges: C:R.62, C:K.155
SO4.16: 5 residues within 4Å:- Chain C: K.146, R.177, N.178, C.179, H.180
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.178, C:C.179, C:H.180, C:T.181
SO4.21: 5 residues within 4Å:- Chain D: F.61, R.62, G.63, A.66, K.155
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.63
- Water bridges: D:A.66
- Salt bridges: D:R.62, D:K.155
SO4.22: 5 residues within 4Å:- Chain D: K.146, R.177, N.178, C.179, H.180
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.178, D:C.179, D:H.180, D:T.181
- 8 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 5 residues within 4Å:- Chain A: D.20, Y.37, D.39, R.52, E.216
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.52, A:K.218
ACY.6: 7 residues within 4Å:- Chain A: Y.170, N.178, C.179, H.180, Y.196, A.197, W.208
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.196, A:A.197
- Hydrogen bonds: A:C.179, A:H.180, A:Y.196
- Salt bridges: A:H.180
ACY.11: 5 residues within 4Å:- Chain B: D.20, Y.37, D.39, R.52, E.216
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.52, B:K.218
ACY.12: 7 residues within 4Å:- Chain B: Y.170, N.178, C.179, H.180, Y.196, A.197, W.208
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.196, B:A.197
- Hydrogen bonds: B:C.179, B:H.180, B:Y.196
- Salt bridges: B:H.180
ACY.17: 5 residues within 4Å:- Chain C: D.20, Y.37, D.39, R.52, E.216
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:R.52, C:K.218
ACY.18: 7 residues within 4Å:- Chain C: Y.170, N.178, C.179, H.180, Y.196, A.197, W.208
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:Y.196, C:A.197
- Hydrogen bonds: C:C.179, C:H.180, C:Y.196
- Salt bridges: C:H.180
ACY.23: 5 residues within 4Å:- Chain D: D.20, Y.37, D.39, R.52, E.216
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:R.52, D:K.218
ACY.24: 7 residues within 4Å:- Chain D: Y.170, N.178, C.179, H.180, Y.196, A.197, W.208
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:Y.196, D:A.197
- Hydrogen bonds: D:C.179, D:H.180, D:Y.196
- Salt bridges: D:H.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, H.M. et al., Crystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs. J.Biol.Chem. (2023)
- Release Date
- 2021-07-21
- Peptides
- Fibrinogen C domain-containing protein 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x CA: CALCIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 8 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Williams, H.M. et al., Crystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs. J.Biol.Chem. (2023)
- Release Date
- 2021-07-21
- Peptides
- Fibrinogen C domain-containing protein 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A