SMTL ID : 4n21.1 (1 other biounit)

Crystal structure of the GP2 Core Domain from the California Academy of Science Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-trimer

Ligands

7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 3 residues within 4Å: Chain A: H.121, M.124, K.125 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:M.124 MPD.2: 3 residues within 4Å: Chain A: S.49, I.52, K.53 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.52, A:K.53 MPD.3: 9 residues within 4Å: Chain A: T.54, A.55, T.58 Chain B: I.51, T.54, A.55, T.58 Chain C: T.54, A.55 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.51, B:T.54, B:A.55, A:T.54 Hydrogen bonds: B:T.58, B:T.58 MPD.4: 3 residues within 4Å: Chain A: K.119 Chain B: K.53, Y.57 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.57 Hydrogen bonds: B:K.53 Water bridges: B:N.56 MPD.5: 2 residues within 4Å: Chain B: N.60, F.63 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.60, B:F.63 MPD.6: 3 residues within 4Å: Chain C: H.121, M.124, K.125 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.125 Water bridges: C:N.56 MPD.7: 3 residues within 4Å: Chain B: K.119 Chain C: K.53, Y.57 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.53, C:Y.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koellhoffer, J.F. et al., Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species. J.Mol.Biol. (2014)

Release Date

2013-11-27

Peptides

GP2 Ectodomain: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GP2 Ectodomain

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