SMTL ID : 4n21.2 (1 other biounit)

Crystal structure of the GP2 Core Domain from the California Academy of Science Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-trimer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: I.51, T.58 Chain B: I.51, A.55, T.58 Chain C: I.51, T.54, A.55, T.58 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:T.54, B:I.51 Hydrogen bonds: B:T.58 MPD.2: 1 residues within 4Å: Chain A: H.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.121 MPD.3: 3 residues within 4Å: Chain A: K.119 Chain B: K.53, Y.57 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.53, A:K.119 Hydrogen bonds: B:K.53 MPD.4: 3 residues within 4Å: Chain B: S.49, I.52, Y.128 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koellhoffer, J.F. et al., Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species. J.Mol.Biol. (2014)

Release Date

2013-11-27

Peptides

GP2 Ectodomain: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

GP2 Ectodomain

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