SMTL ID : 4n23.1

Crystal structure of the GP2 Core Domain from the California Academy of Science Virus, monoclinic symmetry

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: H.121, M.124, K.125, Y.128 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.128 MPD.2: 3 residues within 4Å: Chain A: K.119 Chain B: K.53, Y.57 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.119, B:Y.57 Hydrogen bonds: B:Y.57 MPD.3: 9 residues within 4Å: Chain A: T.54, T.58 Chain B: I.51, T.54, A.55 Chain C: I.51, T.54, A.55, T.58 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:I.51, B:A.55, A:T.54 Hydrogen bonds: C:T.58, C:T.58 MPD.4: 3 residues within 4Å: Chain C: H.121, M.124, K.125 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:M.124, C:K.125

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.5: 3 residues within 4Å: Chain B: K.119 Chain C: K.53, Y.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koellhoffer, J.F. et al., Structural Characterization of the Glycoprotein GP2 Core Domain from the CAS Virus, a Novel Arenavirus-Like Species. J.Mol.Biol. (2014)

Release Date

2013-11-27

Peptides

GP2 Ectodomain: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GP2 Ectodomain

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