SMTL ID : 4n5y.4 (4 other biounits)

Crystal structure of H5 hemagglutinin mutant (N158D, N224K and Q226L) from the influenza virus A/Viet Nam/1203/2004 (H5N1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

hetero-3-3-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.169, N.240, D.241, A.242 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.27 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain B: N.27 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 1 residues within 4Å: Chain C: N.27 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 5 residues within 4Å: Chain A: S.221 Chain B: N.169, N.240, D.241, A.242 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 5 residues within 4Å: Chain B: S.221 Chain C: N.169, N.240, D.241, A.242 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.P. et al., Hemagglutinin Receptor Specificity and Structural Analyses of Respiratory Droplet-Transmissible H5N1 Viruses. J.Virol. (2014)

Release Date

2013-11-20

Peptides

Hemagglutinin HA1 chain: ABC
Hemagglutinin HA2 chain: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
U

C
W

D
T

E
V

F
X

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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