SMTL ID : 4n5y.5 (4 other biounits)

Crystal structure of H5 hemagglutinin mutant (N158D, N224K and Q226L) from the influenza virus A/Viet Nam/1203/2004 (H5N1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

hetero-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.169, N.240, D.241, A.242 Chain C: S.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240 NAG-NAG.2: 5 residues within 4Å: Chain A: S.221 Chain B: N.169, N.240, D.241, A.242 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.240

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: Q.19, K.26, N.27 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.26 Hydrogen bonds: A:N.27 NAG.4: 5 residues within 4Å: Chain B: S.221 Chain C: N.169, N.240, D.241, A.242 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:A.242 Hydrogen bonds: C:N.169, C:N.240, C:N.240 NAG.5: 3 residues within 4Å: Chain C: Q.19, K.26, N.27 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.26 Hydrogen bonds: C:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.P. et al., Hemagglutinin Receptor Specificity and Structural Analyses of Respiratory Droplet-Transmissible H5N1 Viruses. J.Virol. (2014)

Release Date

2013-11-20

Peptides

Hemagglutinin HA1 chain: ABC
Hemagglutinin HA2 chain: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

B
a

C
c

D
Z

E
b

F
d

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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