SMTL ID : 4n5z.2 (4 other biounits)

Crystal structure of aerosol transmissible influenza H5 hemagglutinin mutant (N158D, N224K, Q226L and T318I) from the influenza virus A/Viet Nam/1203/2004 (H5N1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.169, N.240, D.241, A.242 Chain C: S.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: S.221 Chain B: N.169, N.240, D.241, A.242 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 4 residues within 4Å: Chain C: N.169, N.240, D.241, A.242 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 3 residues within 4Å: Chain B: Q.19, K.26, N.27 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: Q.19, K.26, N.27 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain C: Q.19, K.26, N.27 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.26 Hydrogen bonds: C:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.P. et al., Hemagglutinin Receptor Specificity and Structural Analyses of Respiratory Droplet-Transmissible H5N1 Viruses. J.Virol. (2014)

Release Date

2013-11-20

Peptides

Hemagglutinin HA1 chain: ABC
Hemagglutinin: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
K

D
D

E
F

F
L

Hemagglutinin HA1 chain

Hemagglutinin

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