SMTL ID : 4ned.1

Crystal STRUCTURE OF C-LOBE OF BOVINE LACTOFERRIN COMPLEXED WITH FENOPROFEN AT 2.1 ANGSTROM RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: L.93, N.204, D.205, W.208, E.214, Q.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.225

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318 ZN.9: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.4: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.118, A:T.123, A:A.124, A:G.125

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: K.100, R.229, R.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.229, A:R.237, A:R.237 Salt bridges: A:R.229, A:R.237

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: S.24, N.27, H.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.27 Water bridges: A:T.2, A:Q.268, A:Q.268 NAG.7: 5 residues within 4Å: Chain A: G.131, L.132, N.135, A.327, N.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.327 Hydrogen bonds: A:N.135, A:N.330

1 x PFN: FENOPROFEN(Non-covalent)

PFN.8: 6 residues within 4Å: Chain A: D.37, V.120, D.121, S.335, A.344, F.345 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.120, A:A.344, A:F.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gautam, L. et al., Crystal STRUCTURE OF C-LOBE OF BOVINE LACTOFERRIN COMPLEXED WITH FENOPROFEN AT 2.1 ANGSTROM RESOLUTION. To be Published

Release Date

2013-12-11

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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