SMTL ID : 4nr9.1

Crystal Structure of the bromodomain of human BAZ2B in complex with acetylated lysine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.37, V.38, N.39, L.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.39, A:L.40 EDO.2: 4 residues within 4Å: Chain A: N.70, E.72, T.73, L.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.70 EDO.3: 5 residues within 4Å: Chain A: M.20, I.21, E.24, K.109, T.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.109 EDO.4: 1 residues within 4Å: Chain A: E.86 No protein-ligand interaction detected (PLIP)

1 x ALY: N(6)-ACETYLLYSINE(Non-covalent)

ALY.5: 6 residues within 4Å: Chain A: P.33, V.38, Y.46, F.88, N.89, I.95 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.38, A:F.88, A:I.95, A:I.95 Hydrogen bonds: A:N.89 Water bridges: A:N.89, A:S.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, F.M. et al., Targeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain. J.Med.Chem. (2013)

Release Date

2013-12-25

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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