SMTL ID : 4nra.1

Crystal Structure of the bromodomain of human BAZ2B in complex with compound-6 E11322

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.37, V.38, N.39, L.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.39, A:L.40 EDO.2: 6 residues within 4Å: Chain A: L.17, M.20, I.21, E.24, K.109, T.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.24 EDO.3: 4 residues within 4Å: Chain A: R.9, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:T.113 EDO.4: 4 residues within 4Å: Chain A: E.72, W.110, F.114, K.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.72 EDO.5: 2 residues within 4Å: Chain A: D.83, T.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.87, A:T.87

1 x 2LW: 1-(8-chloro-1,3,4,5-tetrahydro-2H-pyrido[4,3-b]indol-2-yl)ethanone(Non-covalent)

2LW.6: 7 residues within 4Å: Chain A: W.32, P.33, F.34, V.38, Y.46, N.89, I.95 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.34 Hydrogen bonds: A:N.89 pi-Stacking: A:W.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, F.M. et al., Targeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain. J.Med.Chem. (2013)

Release Date

2013-12-25

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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