SMTL ID : 4nrc.1

Crystal Structure of the bromodomain of human BAZ2B in complex with compound-3 N01186

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x 2LY: N-methyl-2,3-dihydrothieno[3,4-b][1,4]dioxine-5-carboxamide(Non-covalent)

2LY.1: 8 residues within 4Å: Chain A: P.33, F.34, V.38, V.43, Y.46, F.88, N.89, I.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.33, A:N.89

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.17, M.20, I.21, E.24, K.109, T.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.109, A:T.113 EDO.3: 5 residues within 4Å: Chain A: R.9, D.10, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:T.113

1 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.4: 3 residues within 4Å: Chain A: L.40, K.41, K.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.47 Water bridges: A:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, F.M. et al., Targeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain. J.Med.Chem. (2013)

Release Date

2013-12-25

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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