SMTL ID : 4oo9.1

Structure of the human class C GPCR metabotropic glutamate receptor 5 transmembrane domain in complex with the negative allosteric modulator mavoglurant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 7 residues within 4Å: Chain A: N.332, V.336, G.340, G.343, C.377, W.380, F.388 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.336, A:W.380, A:W.380, A:W.380 OLA.2: 6 residues within 4Å: Chain A: P.4, V.5, I.16, C.23, L.24 Ligands: OLA.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.16, A:L.24 Hydrogen bonds: A:V.5 OLA.3: 4 residues within 4Å: Chain A: Y.80, V.304, F.307, I.308 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.304, A:I.308 Hydrogen bonds: A:Y.80, A:F.307 OLA.4: 7 residues within 4Å: Chain A: P.4, V.19, C.23, F.68, I.71, A.72 Ligands: OLA.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.4, A:V.19, A:F.68, A:F.68, A:I.71 Hydrogen bonds: A:I.71

1 x 2U8: Mavoglurant(Non-covalent)

2U8.5: 20 residues within 4Å: Chain A: G.59, I.60, I.86, S.89, P.90, S.93, Y.94, V.335, P.338, L.339, N.342, I.346, W.380, F.383, M.397, S.400, V.401, S.404, A.405, A.408 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.90, A:Y.94, A:L.339, A:I.346, A:F.383, A:V.401, A:A.405, A:A.408 Hydrogen bonds: A:N.342, A:S.404, A:S.404

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 6 residues within 4Å: Chain A: Y.325, I.327, N.391, Y.392, K.393, I.394 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.393, A:I.394

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dore, A.S. et al., Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain. Nature (2014)

Release Date

2014-07-02

Peptides

Metabotropic glutamate receptor 5, Lysozyme, Metabotropic glutamate receptor 5 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5, Lysozyme, Metabotropic glutamate receptor 5 chimera

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