SMTL ID : 4ouc.1

Structure of human haspin in complex with histone H3 substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: E.113, F.115, E.165, V.242, S.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113 Water bridges: A:G.117

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.169, M.174, L.216, K.217, K.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.216 Water bridges: A:K.218, A:K.218 EDO.3: 8 residues within 4Å: Chain A: T.112, G.114, Q.190, A.193, S.194, H.225, Y.226, Q.241 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.112, A:Q.190 Water bridges: A:T.112, A:E.113, A:Q.241, A:Q.241 EDO.4: 3 residues within 4Å: Chain A: L.79, D.148, F.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.79 Water bridges: A:L.79 EDO.5: 2 residues within 4Å: Chain A: E.287, Y.298 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.298, A:Y.298 EDO.6: 4 residues within 4Å: Chain A: F.34, G.126, S.127, P.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.127 Water bridges: A:S.127, A:S.127 EDO.7: 5 residues within 4Å: Chain A: L.312, F.317, K.320, C.321, K.330 No protein-ligand interaction detected (PLIP)

1 x 5ID: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL(Non-covalent)

5ID.8: 17 residues within 4Å: Chain A: I.49, G.50, E.51, F.54, V.57, A.68, I.116, F.164, E.165, F.166, G.167, G.168, D.170, G.212, L.215, I.245 Ligands: IOD.9 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.68, A:L.215 Hydrogen bonds: A:E.165, A:G.167 Water bridges: A:E.51, A:E.51, A:D.170

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.9: 3 residues within 4Å: Chain A: K.70, D.246 Ligands: 5ID.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maiolica, A. et al., Modulation of the chromatin phosphoproteome by the haspin protein kinase. Mol Cell Proteomics (2014)

Release Date

2014-04-16

Peptides

Serine/threonine-protein kinase haspin: A
Histone H3.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase haspin

Histone H3.2

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