- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 6 residues within 4Å:- Chain A: E.113, R.209
- Chain B: F.18, H.19, H.29
- Ligands: ZN.16
Ligand excluded by PLIPCL.7: 6 residues within 4Å:- Chain A: L.140, D.141, D.182
- Ligands: ZN.2, CL.8, ACT.15
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: D.141, D.182
- Ligands: ZN.2, CL.7
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: H.251
- Ligands: ZN.4
Ligand excluded by PLIPCL.17: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 7 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 6 residues within 4Å:- Chain A: T.36, R.38, T.39, W.53, V.56, D.74
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.39, A:W.53
- Hydrogen bonds: A:D.74
ACT.11: 2 residues within 4Å:- Chain A: G.51, D.54
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.54
- Water bridges: A:S.55
ACT.12: 2 residues within 4Å:- Chain A: R.58, L.60
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.60
- Salt bridges: A:R.58
ACT.13: 4 residues within 4Å:- Chain A: R.209
- Chain B: N.71, F.72, Q.73
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.71, B:Q.73
- Water bridges: B:F.72
- Salt bridges: A:R.209
ACT.14: 6 residues within 4Å:- Chain A: G.134, T.135, L.136, E.156, T.158, Q.170
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.135
- Hydrogen bonds: A:L.136
- Water bridges: A:L.136, A:E.156
ACT.15: 3 residues within 4Å:- Chain A: P.177, P.185
- Ligands: CL.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.177, A:P.185
- Salt bridges: A:K.150
ACT.21: 2 residues within 4Å:- Chain B: K.37, D.52
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.41
- Salt bridges: B:K.37
- 2 x CA: CALCIUM ION(Non-covalent)
CA.18: 5 residues within 4Å:- Chain B: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.63, B:D.67, B:E.69, B:E.74, H2O.7
CA.19: 5 residues within 4Å:- Chain B: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.22, B:E.25, B:D.27, B:T.30, H2O.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: A
Protein S100-A6: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x ACT: ACETATE ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: A
Protein S100-A6: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B