- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 6 residues within 4Å:- Chain A: E.113, R.209
- Chain B: F.18, H.19, H.29
- Ligands: ZN.16
Ligand excluded by PLIPCL.7: 6 residues within 4Å:- Chain A: L.140, D.141, D.182
- Ligands: ZN.2, CL.8, ACT.15
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: D.141, D.182
- Ligands: ZN.2, CL.7
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: H.251
- Ligands: ZN.4
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain D: I.46
Ligand excluded by PLIPCL.26: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.27: 6 residues within 4Å:- Chain C: E.113, R.209
- Chain D: F.18, H.19, H.29
- Ligands: ZN.37
Ligand excluded by PLIPCL.28: 6 residues within 4Å:- Chain C: L.140, D.141, D.182
- Ligands: ZN.23, CL.29, ACT.36
Ligand excluded by PLIPCL.29: 4 residues within 4Å:- Chain C: D.141, D.182
- Ligands: ZN.23, CL.28
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain C: H.251
- Ligands: ZN.25
Ligand excluded by PLIPCL.38: 1 residues within 4Å:- Chain B: I.46
Ligand excluded by PLIP- 14 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 6 residues within 4Å:- Chain A: T.36, R.38, T.39, W.53, V.56, D.74
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.39, A:W.53
- Hydrogen bonds: A:D.74
ACT.11: 2 residues within 4Å:- Chain A: G.51, D.54
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.54
- Water bridges: A:S.55
ACT.12: 2 residues within 4Å:- Chain A: R.58, L.60
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.60
- Salt bridges: A:R.58
ACT.13: 4 residues within 4Å:- Chain A: R.209
- Chain B: N.71, F.72, Q.73
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.71, B:Q.73
- Water bridges: B:F.72
- Salt bridges: A:R.209
ACT.14: 6 residues within 4Å:- Chain A: G.134, T.135, L.136, E.156, T.158, Q.170
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:T.135
- Hydrogen bonds: A:L.136
- Water bridges: A:L.136, A:E.156
ACT.15: 3 residues within 4Å:- Chain A: P.177, P.185
- Ligands: CL.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.177, A:P.185
- Salt bridges: A:K.150
ACT.21: 2 residues within 4Å:- Chain B: K.37, D.52
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.41
- Salt bridges: B:K.37
ACT.31: 6 residues within 4Å:- Chain C: T.36, R.38, T.39, W.53, V.56, D.74
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.39, C:W.53
- Hydrogen bonds: C:T.36
ACT.32: 2 residues within 4Å:- Chain C: G.51, D.54
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.54
- Water bridges: C:D.54, C:S.55
ACT.33: 2 residues within 4Å:- Chain C: R.58, L.60
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.60
- Salt bridges: C:R.58
ACT.34: 4 residues within 4Å:- Chain C: R.209
- Chain D: N.71, F.72, Q.73
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:N.71, D:Q.73
- Water bridges: D:F.72
- Salt bridges: C:R.209
ACT.35: 6 residues within 4Å:- Chain C: G.134, T.135, L.136, E.156, T.158, Q.170
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:T.135
- Hydrogen bonds: C:L.136
- Water bridges: C:L.136, C:E.156
ACT.36: 3 residues within 4Å:- Chain C: P.177, P.185
- Ligands: CL.28
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:P.177, C:P.185
- Salt bridges: C:K.150
ACT.42: 2 residues within 4Å:- Chain D: K.37, D.52
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.41
- Salt bridges: D:K.37
- 4 x CA: CALCIUM ION(Non-covalent)
CA.18: 5 residues within 4Å:- Chain B: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.63, B:D.67, B:E.69, B:E.74, H2O.7
CA.19: 5 residues within 4Å:- Chain B: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.22, B:E.25, B:D.27, B:T.30, H2O.7
CA.39: 5 residues within 4Å:- Chain D: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.63, D:D.67, D:E.69, D:E.74, H2O.14
CA.40: 5 residues within 4Å:- Chain D: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:S.22, D:E.25, D:D.27, D:T.30, H2O.14
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: AC
Protein S100-A6: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 14 x ACT: ACETATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: AC
Protein S100-A6: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B