- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 24 x ZN: ZINC ION(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 6 residues within 4Å:- Chain A: E.113, R.209
- Chain B: F.18, H.19, H.29
- Ligands: ZN.16
Ligand excluded by PLIPCL.7: 6 residues within 4Å:- Chain A: L.140, D.141, D.182
- Ligands: ZN.2, CL.8, ACT.15
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: D.141, D.182
- Ligands: ZN.2, CL.7
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: H.251
- Ligands: ZN.4
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain F: I.46
Ligand excluded by PLIPCL.26: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.27: 6 residues within 4Å:- Chain C: E.113, R.209
- Chain D: F.18, H.19, H.29
- Ligands: ZN.37
Ligand excluded by PLIPCL.28: 6 residues within 4Å:- Chain C: L.140, D.141, D.182
- Ligands: ZN.23, CL.29, ACT.36
Ligand excluded by PLIPCL.29: 4 residues within 4Å:- Chain C: D.141, D.182
- Ligands: ZN.23, CL.28
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain C: H.251
- Ligands: ZN.25
Ligand excluded by PLIPCL.38: 1 residues within 4Å:- Chain H: I.46
Ligand excluded by PLIPCL.47: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.48: 6 residues within 4Å:- Chain E: E.113, R.209
- Chain F: F.18, H.19, H.29
- Ligands: ZN.58
Ligand excluded by PLIPCL.49: 6 residues within 4Å:- Chain E: L.140, D.141, D.182
- Ligands: ZN.44, CL.50, ACT.57
Ligand excluded by PLIPCL.50: 4 residues within 4Å:- Chain E: D.141, D.182
- Ligands: ZN.44, CL.49
Ligand excluded by PLIPCL.51: 2 residues within 4Å:- Chain E: H.251
- Ligands: ZN.46
Ligand excluded by PLIPCL.59: 1 residues within 4Å:- Chain B: I.46
Ligand excluded by PLIPCL.68: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.69: 6 residues within 4Å:- Chain G: E.113, R.209
- Chain H: F.18, H.19, H.29
- Ligands: ZN.79
Ligand excluded by PLIPCL.70: 6 residues within 4Å:- Chain G: L.140, D.141, D.182
- Ligands: ZN.65, CL.71, ACT.78
Ligand excluded by PLIPCL.71: 4 residues within 4Å:- Chain G: D.141, D.182
- Ligands: ZN.65, CL.70
Ligand excluded by PLIPCL.72: 2 residues within 4Å:- Chain G: H.251
- Ligands: ZN.67
Ligand excluded by PLIPCL.80: 1 residues within 4Å:- Chain D: I.46
Ligand excluded by PLIP- 28 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 6 residues within 4Å:- Chain A: T.36, R.38, T.39, W.53, V.56, D.74
Ligand excluded by PLIPACT.11: 5 residues within 4Å:- Chain A: G.51, D.54
- Chain H: D.67, Q.68, E.69
Ligand excluded by PLIPACT.12: 2 residues within 4Å:- Chain A: R.58, L.60
Ligand excluded by PLIPACT.13: 4 residues within 4Å:- Chain A: R.209
- Chain B: N.71, F.72, Q.73
Ligand excluded by PLIPACT.14: 6 residues within 4Å:- Chain A: G.134, T.135, L.136, E.156, T.158, Q.170
Ligand excluded by PLIPACT.15: 3 residues within 4Å:- Chain A: P.177, P.185
- Ligands: CL.7
Ligand excluded by PLIPACT.21: 2 residues within 4Å:- Chain B: K.37, D.52
Ligand excluded by PLIPACT.31: 6 residues within 4Å:- Chain C: T.36, R.38, T.39, W.53, V.56, D.74
Ligand excluded by PLIPACT.32: 5 residues within 4Å:- Chain C: G.51, D.54
- Chain F: D.67, Q.68, E.69
Ligand excluded by PLIPACT.33: 2 residues within 4Å:- Chain C: R.58, L.60
Ligand excluded by PLIPACT.34: 4 residues within 4Å:- Chain C: R.209
- Chain D: N.71, F.72, Q.73
Ligand excluded by PLIPACT.35: 6 residues within 4Å:- Chain C: G.134, T.135, L.136, E.156, T.158, Q.170
Ligand excluded by PLIPACT.36: 3 residues within 4Å:- Chain C: P.177, P.185
- Ligands: CL.28
Ligand excluded by PLIPACT.42: 2 residues within 4Å:- Chain D: K.37, D.52
Ligand excluded by PLIPACT.52: 6 residues within 4Å:- Chain E: T.36, R.38, T.39, W.53, V.56, D.74
Ligand excluded by PLIPACT.53: 5 residues within 4Å:- Chain D: D.67, Q.68, E.69
- Chain E: G.51, D.54
Ligand excluded by PLIPACT.54: 2 residues within 4Å:- Chain E: R.58, L.60
Ligand excluded by PLIPACT.55: 4 residues within 4Å:- Chain E: R.209
- Chain F: N.71, F.72, Q.73
Ligand excluded by PLIPACT.56: 6 residues within 4Å:- Chain E: G.134, T.135, L.136, E.156, T.158, Q.170
Ligand excluded by PLIPACT.57: 3 residues within 4Å:- Chain E: P.177, P.185
- Ligands: CL.49
Ligand excluded by PLIPACT.63: 2 residues within 4Å:- Chain F: K.37, D.52
Ligand excluded by PLIPACT.73: 6 residues within 4Å:- Chain G: T.36, R.38, T.39, W.53, V.56, D.74
Ligand excluded by PLIPACT.74: 5 residues within 4Å:- Chain B: D.67, Q.68, E.69
- Chain G: G.51, D.54
Ligand excluded by PLIPACT.75: 2 residues within 4Å:- Chain G: R.58, L.60
Ligand excluded by PLIPACT.76: 4 residues within 4Å:- Chain G: R.209
- Chain H: N.71, F.72, Q.73
Ligand excluded by PLIPACT.77: 6 residues within 4Å:- Chain G: G.134, T.135, L.136, E.156, T.158, Q.170
Ligand excluded by PLIPACT.78: 3 residues within 4Å:- Chain G: P.177, P.185
- Ligands: CL.70
Ligand excluded by PLIPACT.84: 2 residues within 4Å:- Chain H: K.37, D.52
Ligand excluded by PLIP- 8 x CA: CALCIUM ION(Non-covalent)
CA.18: 5 residues within 4Å:- Chain B: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.63, B:D.67, B:E.69, B:E.74, H2O.7
CA.19: 5 residues within 4Å:- Chain B: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.22, B:E.25, B:D.27, B:T.30, H2O.7
CA.39: 5 residues within 4Å:- Chain D: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.63, D:D.67, D:E.69, D:E.74, H2O.14
CA.40: 5 residues within 4Å:- Chain D: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:S.22, D:E.25, D:D.27, D:T.30, H2O.14
CA.60: 5 residues within 4Å:- Chain F: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.63, F:D.67, F:E.69, F:E.74, H2O.22
CA.61: 5 residues within 4Å:- Chain F: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:S.22, F:E.25, F:D.27, F:T.30, H2O.21
CA.81: 5 residues within 4Å:- Chain H: D.63, N.65, D.67, E.69, E.74
5 PLIP interactions:4 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:D.63, H:D.67, H:E.69, H:E.74, H2O.29
CA.82: 5 residues within 4Å:- Chain H: S.22, E.25, D.27, T.30, E.35
5 PLIP interactions:4 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:S.22, H:E.25, H:D.27, H:T.30, H2O.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: ACEG
Protein S100-A6: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 24 x ZN: ZINC ION(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- 28 x ACT: ACETATE ION(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yatime, L. et al., The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Structure (2016)
- Release Date
- 2015-03-11
- Peptides
- Advanced glycosylation end product-specific receptor: ACEG
Protein S100-A6: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B