SMTL ID : 4p4k.1 (1 other biounit)

Structural Basis of Chronic Beryllium Disease: Bridging the Gap Between allergic hypersensitivity and auto immunity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.76, N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78 NAG.2: 5 residues within 4Å: Chain A: L.117, N.118, E.166, H.167, W.168 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.166 Hydrogen bonds: A:W.168 NAG.3: 2 residues within 4Å: Chain B: F.41, N.42 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain B: D.6, L.7, E.9, E.91, E.92 Ligands: 0BE.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.9 Water bridges: B:L.7

1 x 0BE: BERYLLIUM(Non-covalent)

0BE.5: 7 residues within 4Å: Chain B: D.6, L.7, E.9, Q.36, E.49, E.92 Ligands: NA.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clayton, G.M. et al., Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity. Cell (2014)

Release Date

2014-07-16

Peptides

HLA class II histocompatibility antigen, DP alpha 1 chain: A
mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain: B
hTCRav22 alpha chain: C
hTCRav22 beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

HLA class II histocompatibility antigen, DP alpha 1 chain

mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain

hTCRav22 alpha chain

hTCRav22 beta chain

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