SMTL ID : 4p57.1 (1 other biounit)

MHC TCR peptide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: R.76, S.77, N.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76, A:N.78 NAG.2: 4 residues within 4Å: Chain A: N.118, E.166, H.167, W.168 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.166 NAG.4: 1 residues within 4Å: Chain B: N.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.42

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: L.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.127

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain B: L.7, E.9, E.91 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.9, B:E.9, B:E.91, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clayton, G.M. et al., Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity. Cell (2014)

Release Date

2014-07-16

Peptides

HLA class II histocompatibility antigen, DP alpha 1 chain: A
mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class II histocompatibility antigen, DP alpha 1 chain

mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain

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