SMTL ID : 4pdg.1

Crystal structure of a complex between an inhibited LlFpg and a THF containing DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 2ON: 2-sulfanyl-1,9-dihydro-6H-purin-6-one(Non-covalent)

2ON.1: 3 residues within 4Å: Chain A: S.246, R.247, C.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.248

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: L.34, Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 Chain B: T.9, T.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.58, A:R.74, A:R.74, A:T.113 Water bridges: A:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biela, A. et al., Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization. Nucleic Acids Res. (2014)

Release Date

2015-04-01

Peptides

Formamidopyrimidine-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formamidopyrimidine-DNA glycosylase

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