SMTL ID : 6rno.1

Crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: L.34, Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 Chain B: T.9, T.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.58, A:Y.58, A:R.74, A:T.113 Water bridges: A:K.129, A:K.129

1 x KBQ: 2-sulfanylidene-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one(Non-covalent)

KBQ.2: 8 residues within 4Å: Chain A: K.57, L.161, E.162, Q.163, R.260 Chain B: T.8, T.9, T.10 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.58, A:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rieux, C. et al., Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci (2020)

Release Date

2020-04-15

Peptides

Formamidopyrimidine-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formamidopyrimidine-DNA glycosylase

Related Entries With Identical Sequence