SMTL ID : 4pnj.1

Recombinant Sperm Whale P6 Myoglobin Solved with Single Pulse Free Electron Laser Data

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: L.33, T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.73, I.76, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, I.112, F.139 Ligands: SO4.3 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:V.69, A:A.72, A:L.90, A:I.100, A:I.100, A:Y.104, A:L.105, A:I.108, A:I.108 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:R.46, A:H.65, A:P.89, A:S.93 Salt bridges: A:R.46, A:H.94, A:H.98 pi-Stacking: A:H.94, A:H.98 Metal complexes: A:H.94, H2O.6

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.32 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.32, A:R.32 Salt bridges: A:R.32 SO4.3: 5 residues within 4Å: Chain A: R.46, K.64, H.65, T.68 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.68 Water bridges: A:K.64 Salt bridges: A:R.46, A:K.64, A:H.65 SO4.4: 3 residues within 4Å: Chain A: G.125, A.126, D.127 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:D.127, A:D.127, A:A.128 SO4.5: 2 residues within 4Å: Chain A: S.4, E.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.5 Water bridges: A:G.6, A:G.6 SO4.6: 3 residues within 4Å: Chain A: S.4, G.6, E.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4, A:S.4 Water bridges: A:G.6 SO4.7: 2 residues within 4Å: Chain A: A.16, K.17 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.17 SO4.8: 4 residues within 4Å: Chain A: Q.27, K.57, E.60, K.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.27, A:K.57 Water bridges: A:K.63 Salt bridges: A:K.63 SO4.9: 4 residues within 4Å: Chain A: H.49, L.50, S.59, D.61 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.59 Water bridges: A:H.49, A:H.49, A:A.58, A:E.60, A:E.60, A:D.61 Salt bridges: A:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen, A.E. et al., Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-11-05

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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