SMTL ID : 4pwj.1

Crystal structure of V30M mutant human transthyretin complexed with nordihydroguaiaretic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

4 x 30Z: 4-[(2R,3S)-3-[(3,4-DIHYDROXYPHENYL)METHYL]-2-METHYLBUTYL]BENZENE-1,2-DIOL(Non-covalent)

30Z.1: 13 residues within 4Å: Chain A: K.47, L.49, T.138, A.140, L.142, S.149 Chain C: K.47, L.49, A.140, L.142, S.149, T.150 Ligands: 30Z.3 15 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D, 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: C:K.47, C:A.140, C:L.142, C:L.142, A:K.47, A:L.49, A:A.140 Hydrogen bonds: C:K.47, C:L.142, C:S.149, C:S.149, A:S.149 pi-Cation interactions: C:K.47 Water bridges: D:S.149, B:S.149 30Z.2: 13 residues within 4Å: Chain B: K.47, L.49, T.138, A.140, L.142, S.149, T.150, T.151 Chain D: K.47, L.49, A.140, L.142 Ligands: 30Z.4 8 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C, 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: D:L.49, D:L.142, B:K.47, B:L.49, B:A.140 Water bridges: C:S.149, A:S.149 Hydrogen bonds: B:S.149 30Z.3: 13 residues within 4Å: Chain A: K.47, L.49, A.140, L.142, S.149, T.150 Chain C: K.47, L.49, T.138, A.140, L.142, S.149 Ligands: 30Z.1 15 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D, 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: C:K.47, C:L.49, C:A.140, A:K.47, A:A.140, A:L.142, A:L.142 Hydrogen bonds: C:S.149, A:K.47, A:L.142, A:S.149, A:S.149 Water bridges: D:S.149, B:S.149 pi-Cation interactions: A:K.47 30Z.4: 13 residues within 4Å: Chain B: K.47, L.49, A.140, L.142 Chain D: K.47, L.49, T.138, A.140, L.142, S.149, T.150, T.151 Ligands: 30Z.2 8 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C, 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: D:K.47, D:L.49, D:A.140, B:L.49, B:L.142 Hydrogen bonds: D:S.149 Water bridges: C:S.149, A:S.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Inhibitory Activities of Propolis and Its Promising Component, Caffeic Acid Phenethyl Ester, against Amyloidogenesis of Human Transthyretin. J.Med.Chem. (2014)

Release Date

2014-11-26

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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