SMTL ID : 4q43.1 (1 other biounit)

Polymerase-damaged DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x 0KX: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine(Non-covalent)

0KX.1: 19 residues within 4Å: Chain A: D.9, M.10, D.11, C.12, F.13, F.14, S.43, T.44, R.50, S.56, A.57, D.104, E.105, K.158 Chain B: X.4, G.5 Chain C: C.18 Ligands: MG.2, MG.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.14 Hydrogen bonds: A:C.12, A:F.13, A:F.14, A:T.44, A:R.50 Water bridges: A:D.11, A:D.11, A:S.56 Salt bridges: A:R.50, A:K.158

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.9, M.10, D.104, K.158 Ligands: 0KX.1, MG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:M.10, A:D.104 MG.3: 5 residues within 4Å: Chain A: D.9, E.105 Chain C: C.18 Ligands: 0KX.1, MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.9, A:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kottur, J. et al., Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic. Structure (2015)

Release Date

2015-05-06

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase IV

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