SMTL ID : 5yur.1 (1 other biounit)

DNA polymerase IV - DNA ternary complex 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.1: 17 residues within 4Å: Chain A: D.9, M.10, D.11, C.12, F.13, F.14, S.43, T.44, R.50, S.56, D.104, E.105, K.158 Chain B: A.4, G.5 Chain C: C.18 Ligands: NA.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.14, A:T.44 Hydrogen bonds: A:D.9, A:M.10, A:C.12, A:F.13, A:F.14, A:T.44, A:D.104 Water bridges: A:D.11, A:R.50, A:R.50, A:S.56, A:S.56 Salt bridges: A:R.50, A:R.50, A:K.158

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.9, M.10, D.104 Ligands: TTP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104, A:K.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kottur, J. et al., Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction. Nucleic Acids Res. (2018)

Release Date

2018-08-29

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

DNA polymerase IV

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