SMTL ID : 5c5j.2 (1 other biounit)

Poymerase Nucleotide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 8GT: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

8GT.1: 18 residues within 4Å: Chain A: D.9, M.10, D.11, C.12, F.13, F.14, S.43, T.44, R.50, S.56, A.57, D.104, E.105, K.158 Chain B: A.4, G.5 Chain C: C.18 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.14, A:T.44 Hydrogen bonds: A:C.12, A:F.13, A:F.14, A:T.44, A:Y.47, A:S.56, A:E.105 Water bridges: A:R.50, A:R.50 Salt bridges: A:R.50, A:K.158

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.9, M.10, D.104 Ligands: 8GT.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:M.10, A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kottur, J. et al., Reactive Oxygen Species Play an Important Role in the Bactericidal Activity of Quinolone Antibiotics. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-06-22

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase IV

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