- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-6-6-6-6-mer
- Ligands
- 18 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 24 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:T.26, A:A.27, A:S.29, A:N.68
CA.4: 4 residues within 4Å:- Chain A: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.33, A:S.34, A:S.58, A:I.61, H2O.9, H2O.107
CA.5: 4 residues within 4Å:- Chain A: V.41, L.44
- Chain D: K.63, A.65
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:K.63, D:A.65, H2O.6, H2O.6, H2O.12
CA.10: 1 residues within 4Å:- Chain B: E.55
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.55, H2O.16
CA.14: 4 residues within 4Å:- Chain E: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:T.26, E:A.27, E:S.29, E:N.68
CA.15: 4 residues within 4Å:- Chain E: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:T.33, E:S.34, E:S.58, E:I.61, H2O.41
CA.16: 4 residues within 4Å:- Chain E: V.41, L.44
- Chain H: K.63, A.65
5 PLIP interactions:2 interactions with chain H, 3 Ligand-Water interactions- Metal complexes: H:K.63, H:A.65, H2O.37, H2O.37, H2O.43
CA.21: 1 residues within 4Å:- Chain F: E.55
2 PLIP interactions:1 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.55, H2O.47
CA.25: 4 residues within 4Å:- Chain I: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:T.26, I:A.27, I:S.29, I:N.68
CA.26: 4 residues within 4Å:- Chain I: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:T.33, I:S.34, I:S.58, I:I.61, H2O.72
CA.27: 4 residues within 4Å:- Chain I: V.41, L.44
- Chain L: K.63, A.65
5 PLIP interactions:2 interactions with chain L, 3 Ligand-Water interactions- Metal complexes: L:K.63, L:A.65, H2O.69, H2O.69, H2O.74
CA.32: 1 residues within 4Å:- Chain J: E.55
2 PLIP interactions:1 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.55, H2O.79
CA.36: 4 residues within 4Å:- Chain M: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain M- Metal complexes: M:T.26, M:A.27, M:S.29, M:N.68
CA.37: 4 residues within 4Å:- Chain M: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain M, 2 Ligand-Water interactions- Metal complexes: M:T.33, M:S.34, M:S.58, M:I.61, H2O.103, H2O.138
CA.38: 4 residues within 4Å:- Chain M: V.41, L.44
- Chain P: K.63, A.65
5 PLIP interactions:2 interactions with chain P, 3 Ligand-Water interactions- Metal complexes: P:K.63, P:A.65, H2O.100, H2O.100, H2O.106
CA.43: 1 residues within 4Å:- Chain N: E.55
2 PLIP interactions:1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:E.55, H2O.110
CA.47: 4 residues within 4Å:- Chain Q: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:T.26, Q:A.27, Q:S.29, Q:N.68
CA.48: 4 residues within 4Å:- Chain Q: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain Q, 2 Ligand-Water interactions- Metal complexes: Q:T.33, Q:S.34, Q:S.58, Q:I.61, H2O.13, H2O.135
CA.49: 4 residues within 4Å:- Chain Q: V.41, L.44
- Chain T: K.63, A.65
5 PLIP interactions:2 interactions with chain T, 3 Ligand-Water interactions- Metal complexes: T:K.63, T:A.65, H2O.131, H2O.131, H2O.137
CA.54: 1 residues within 4Å:- Chain R: E.55
2 PLIP interactions:1 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: R:E.55, H2O.141
CA.58: 4 residues within 4Å:- Chain U: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain U- Metal complexes: U:T.26, U:A.27, U:S.29, U:N.68
CA.59: 4 residues within 4Å:- Chain U: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: U:T.33, U:S.34, U:S.58, U:I.61, H2O.166
CA.60: 4 residues within 4Å:- Chain U: V.41, L.44
- Chain X: K.63, A.65
5 PLIP interactions:2 interactions with chain X, 3 Ligand-Water interactions- Metal complexes: X:K.63, X:A.65, H2O.163, H2O.163, H2O.168
CA.65: 1 residues within 4Å:- Chain V: E.55
2 PLIP interactions:1 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:E.55, H2O.173
- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain A: N.248, E.249
- Chain E: T.141, K.258
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: R.245
- Chain E: R.260
Ligand excluded by PLIPCL.8: 5 residues within 4Å:- Chain A: K.220, D.221
- Chain B: A.269, T.270, Q.271
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain B: D.88, G.151, E.152
Ligand excluded by PLIPCL.17: 2 residues within 4Å:- Chain E: N.248, E.249
Ligand excluded by PLIPCL.18: 1 residues within 4Å:- Chain E: R.245
Ligand excluded by PLIPCL.19: 5 residues within 4Å:- Chain E: K.220, D.221
- Chain F: A.269, T.270, Q.271
Ligand excluded by PLIPCL.22: 3 residues within 4Å:- Chain F: D.88, G.151, E.152
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain I: N.248, E.249
Ligand excluded by PLIPCL.29: 1 residues within 4Å:- Chain I: R.245
Ligand excluded by PLIPCL.30: 5 residues within 4Å:- Chain I: K.220, D.221
- Chain J: A.269, T.270, Q.271
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain J: D.88, G.151, E.152
Ligand excluded by PLIPCL.39: 4 residues within 4Å:- Chain I: T.141, K.258
- Chain M: N.248, E.249
Ligand excluded by PLIPCL.40: 2 residues within 4Å:- Chain I: R.260
- Chain M: R.245
Ligand excluded by PLIPCL.41: 5 residues within 4Å:- Chain M: K.220, D.221
- Chain N: A.269, T.270, Q.271
Ligand excluded by PLIPCL.44: 3 residues within 4Å:- Chain N: D.88, G.151, E.152
Ligand excluded by PLIPCL.50: 4 residues within 4Å:- Chain Q: N.248, E.249
- Chain U: T.141, K.258
Ligand excluded by PLIPCL.51: 2 residues within 4Å:- Chain Q: R.245
- Chain U: R.260
Ligand excluded by PLIPCL.52: 5 residues within 4Å:- Chain Q: K.220, D.221
- Chain R: A.269, T.270, Q.271
Ligand excluded by PLIPCL.55: 3 residues within 4Å:- Chain R: D.88, G.151, E.152
Ligand excluded by PLIPCL.61: 2 residues within 4Å:- Chain U: N.248, E.249
Ligand excluded by PLIPCL.62: 1 residues within 4Å:- Chain U: R.245
Ligand excluded by PLIPCL.63: 5 residues within 4Å:- Chain U: K.220, D.221
- Chain V: A.269, T.270, Q.271
Ligand excluded by PLIPCL.66: 3 residues within 4Å:- Chain V: D.88, G.151, E.152
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQU
Coxsackievirus capsid protein VP2: BFJNRV
Coxsackievirus capsid protein VP3: CGKOSW
Coxsackievirus capsid protein VP4: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1B
2F
2J
2N
2R
2V
2C
3G
3K
3O
3S
3W
3D
4H
4L
4P
4T
4X
4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-6-6-6-6-mer
- Ligands
- 18 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 24 x CA: CALCIUM ION(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQU
Coxsackievirus capsid protein VP2: BFJNRV
Coxsackievirus capsid protein VP3: CGKOSW
Coxsackievirus capsid protein VP4: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1B
2F
2J
2N
2R
2V
2C
3G
3K
3O
3S
3W
3D
4H
4L
4P
4T
4X
4