- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x IMP: INOSINIC ACID(Non-covalent)
- 8 x NAJ: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)(Non-covalent)
NAJ.2: 24 residues within 4Å:- Chain A: K.77, A.105, D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268, E.294
- Chain G: V.28, L.29, P.30, S.319, G.322, L.323
- Ligands: IMP.1
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain G- Hydrogen bonds: A:K.77, A:A.105, A:D.127, A:S.129, A:S.129, A:S.129, A:S.133, A:N.156, A:G.177, A:G.179, G:S.319, G:L.323
- Water bridges: A:S.53
- pi-Stacking: A:H.130
NAJ.5: 21 residues within 4Å:- Chain B: D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268
- Chain F: V.28, L.29, P.30, S.319, G.322, L.323
- Ligands: IMP.4
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain F- Hydrogen bonds: B:D.127, B:D.127, B:S.129, B:S.129, B:S.129, B:S.133, B:V.136, B:N.156, B:G.177, B:G.179, F:S.319
- Water bridges: B:S.53
- pi-Stacking: B:H.130
NAJ.8: 24 residues within 4Å:- Chain C: K.77, A.105, D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268, E.294
- Chain E: V.28, L.29, P.30, S.319, G.322, L.323
- Ligands: IMP.7
14 PLIP interactions:12 interactions with chain C, 2 interactions with chain E- Hydrogen bonds: C:K.77, C:A.105, C:D.127, C:S.129, C:S.129, C:S.129, C:S.133, C:N.156, C:G.177, C:G.179, E:S.319, E:L.323
- Water bridges: C:S.53
- pi-Stacking: C:H.130
NAJ.11: 21 residues within 4Å:- Chain D: D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268
- Chain H: V.28, L.29, P.30, S.319, G.322, L.323
- Ligands: IMP.10
13 PLIP interactions:12 interactions with chain D, 1 interactions with chain H- Hydrogen bonds: D:D.127, D:D.127, D:S.129, D:S.129, D:S.129, D:S.133, D:V.136, D:N.156, D:G.177, D:G.179, H:S.319
- Water bridges: D:S.53
- pi-Stacking: D:H.130
NAJ.14: 24 residues within 4Å:- Chain A: V.28, L.29, P.30, S.319, G.322, L.323
- Chain E: K.77, A.105, D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268, E.294
- Ligands: IMP.13
14 PLIP interactions:2 interactions with chain A, 12 interactions with chain E- Hydrogen bonds: A:S.319, A:L.323, E:K.77, E:A.105, E:D.127, E:S.129, E:S.129, E:S.129, E:S.133, E:N.156, E:G.177, E:G.179
- Water bridges: E:S.53
- pi-Stacking: E:H.130
NAJ.17: 21 residues within 4Å:- Chain D: V.28, L.29, P.30, S.319, G.322, L.323
- Chain F: D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268
- Ligands: IMP.16
13 PLIP interactions:12 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:D.127, F:D.127, F:S.129, F:S.129, F:S.129, F:S.133, F:V.136, F:N.156, F:G.177, F:G.179, D:S.319
- Water bridges: F:S.53
- pi-Stacking: F:H.130
NAJ.20: 24 residues within 4Å:- Chain C: V.28, L.29, P.30, S.319, G.322, L.323
- Chain G: K.77, A.105, D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268, E.294
- Ligands: IMP.19
14 PLIP interactions:12 interactions with chain G, 2 interactions with chain C- Hydrogen bonds: G:K.77, G:A.105, G:D.127, G:S.129, G:S.129, G:S.129, G:S.133, G:N.156, G:G.177, G:G.179, C:S.319, C:L.323
- Water bridges: G:S.53
- pi-Stacking: G:H.130
NAJ.23: 21 residues within 4Å:- Chain B: V.28, L.29, P.30, S.319, G.322, L.323
- Chain H: D.127, S.128, S.129, H.130, S.133, V.136, N.156, G.177, I.178, G.179, C.184, T.186, M.267, G.268
- Ligands: IMP.22
13 PLIP interactions:12 interactions with chain H, 1 interactions with chain B- Hydrogen bonds: H:D.127, H:D.127, H:S.129, H:S.129, H:S.129, H:S.133, H:V.136, H:N.156, H:G.177, H:G.179, B:S.319
- Water bridges: H:S.53
- pi-Stacking: H:H.130
- 8 x K: POTASSIUM ION(Non-covalent)
K.3: 7 residues within 4Å:- Chain A: G.179, P.180, G.181, C.184
- Chain G: E.348, S.349, H.350
5 PLIP interactions:2 interactions with chain G, 3 interactions with chain A- Metal complexes: G:E.348, G:S.349, A:G.179, A:G.181, A:C.184
K.6: 7 residues within 4Å:- Chain B: G.179, P.180, G.181, C.184
- Chain F: E.348, S.349, H.350
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain F- Metal complexes: B:G.179, B:G.181, B:C.184, F:E.348, F:S.349
K.9: 7 residues within 4Å:- Chain C: G.179, P.180, G.181, C.184
- Chain E: E.348, S.349, H.350
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain C- Metal complexes: E:E.348, E:S.349, C:G.179, C:G.181, C:C.184
K.12: 7 residues within 4Å:- Chain D: G.179, P.180, G.181, C.184
- Chain H: E.348, S.349, H.350
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain H- Metal complexes: D:G.179, D:G.181, D:C.184, H:E.348, H:S.349
K.15: 7 residues within 4Å:- Chain A: E.348, S.349, H.350
- Chain E: G.179, P.180, G.181, C.184
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain A- Metal complexes: E:G.179, E:G.181, E:C.184, A:E.348, A:S.349
K.18: 7 residues within 4Å:- Chain D: E.348, S.349, H.350
- Chain F: G.179, P.180, G.181, C.184
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain D- Metal complexes: F:G.179, F:G.181, F:C.184, D:E.348, D:S.349
K.21: 7 residues within 4Å:- Chain C: E.348, S.349, H.350
- Chain G: G.179, P.180, G.181, C.184
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain G- Metal complexes: C:E.348, C:S.349, G:G.179, G:G.181, G:C.184
K.24: 7 residues within 4Å:- Chain B: E.348, S.349, H.350
- Chain H: G.179, P.180, G.181, C.184
5 PLIP interactions:3 interactions with chain H, 2 interactions with chain B- Metal complexes: H:G.179, H:G.181, H:C.184, B:E.348, B:S.349
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant, in complex with NAD and IMP. To be Published
- Release Date
- 2014-08-06
- Peptides
- Inosine 5'-monophosphate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x IMP: INOSINIC ACID(Non-covalent)
- 8 x NAJ: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant, in complex with NAD and IMP. To be Published
- Release Date
- 2014-08-06
- Peptides
- Inosine 5'-monophosphate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B