- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 20 residues within 4Å:- Chain A: K.77, A.106, D.127, S.128, S.129, H.130, S.133, N.156, G.177, I.178, G.179, T.186, M.267, G.268, E.294
- Chain D: V.28, L.29, P.30, G.322
- Ligands: XMP.1
19 PLIP interactions:18 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:D.127, A:S.129, A:S.133, A:N.156, A:G.177, A:G.179, D:G.322
- Water bridges: A:A.106, A:S.129, A:S.129, A:H.130, A:H.130, A:H.130, A:K.175, A:E.294
- Salt bridges: A:H.130, A:H.130
- pi-Stacking: A:H.130, A:H.130
NAD.6: 20 residues within 4Å:- Chain B: K.77, A.106, D.127, S.128, S.129, H.130, S.133, N.156, G.177, I.178, G.179, T.186, M.267, G.268, E.294
- Chain C: V.28, L.29, P.30, G.322
- Ligands: XMP.5
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:D.127, B:S.129, B:S.133, B:N.156, B:G.177, B:G.179, C:G.322
- Water bridges: B:A.106, B:S.129, B:S.129, B:H.130, B:H.130, B:H.130, B:K.175, B:E.294
- Salt bridges: B:H.130, B:H.130
- pi-Stacking: B:H.130, B:H.130
NAD.10: 20 residues within 4Å:- Chain A: V.28, L.29, P.30, G.322
- Chain C: K.77, A.106, D.127, S.128, S.129, H.130, S.133, N.156, G.177, I.178, G.179, T.186, M.267, G.268, E.294
- Ligands: XMP.9
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:D.127, C:S.129, C:S.133, C:N.156, C:G.177, C:G.179, A:G.322
- Water bridges: C:A.106, C:S.129, C:S.129, C:H.130, C:H.130, C:H.130, C:K.175, C:E.294
- Salt bridges: C:H.130, C:H.130
- pi-Stacking: C:H.130, C:H.130
NAD.14: 20 residues within 4Å:- Chain B: V.28, L.29, P.30, G.322
- Chain D: K.77, A.106, D.127, S.128, S.129, H.130, S.133, N.156, G.177, I.178, G.179, T.186, M.267, G.268, E.294
- Ligands: XMP.13
19 PLIP interactions:18 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:D.127, D:S.129, D:S.133, D:N.156, D:G.177, D:G.179, B:G.322
- Water bridges: D:A.106, D:S.129, D:S.129, D:H.130, D:H.130, D:H.130, D:K.175, D:E.294
- Salt bridges: D:H.130, D:H.130
- pi-Stacking: D:H.130, D:H.130
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 7 residues within 4Å:- Chain A: E.348, S.349, H.350
- Chain C: G.179, P.180, G.181, C.184
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Metal complexes: C:G.181, C:C.184, A:E.348, A:S.349, A:H.350
K.7: 7 residues within 4Å:- Chain B: E.348, S.349, H.350
- Chain D: G.179, P.180, G.181, C.184
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Metal complexes: B:E.348, B:S.349, B:H.350, D:G.181, D:C.184
K.11: 7 residues within 4Å:- Chain B: G.179, P.180, G.181, C.184
- Chain C: E.348, S.349, H.350
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Metal complexes: C:E.348, C:S.349, C:H.350, B:G.181, B:C.184
K.15: 7 residues within 4Å:- Chain A: G.179, P.180, G.181, C.184
- Chain D: E.348, S.349, H.350
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain D- Metal complexes: A:G.181, A:C.184, D:E.348, D:S.349, D:H.350
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: N.42, R.98, D.122, H.149
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.98, A:D.122, A:D.122, A:H.149
- Water bridges: A:E.151, A:E.151
GOL.8: 4 residues within 4Å:- Chain B: N.42, R.98, D.122, H.149
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.98, B:D.122, B:D.122, B:H.149
- Water bridges: B:E.151, B:E.151
GOL.12: 4 residues within 4Å:- Chain C: N.42, R.98, D.122, H.149
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.98, C:D.122, C:D.122, C:H.149
- Water bridges: C:E.151, C:E.151
GOL.16: 4 residues within 4Å:- Chain D: N.42, R.98, D.122, H.149
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.98, D:D.122, D:D.122, D:H.149
- Water bridges: D:E.151, D:E.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant, in complex with XMP and NAD. to be published
- Release Date
- 2014-12-10
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant, in complex with XMP and NAD. to be published
- Release Date
- 2014-12-10
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A