SMTL ID : 4qnj.1

The structure of wt A. thaliana IGPD2 in complex with Mn2+ and formate at 1.3A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-24-mer

Ligands

48 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.71, E.75, H.143 Chain W: H.168 Ligands: FMT.3 5 PLIP interactions: 1 interactions with chain W, 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: W:H.168, A:H.71, A:E.75, A:H.143, H2O.8 MN.2: 5 residues within 4Å: Chain A: H.72 Chain W: H.45, H.167, E.171 Ligands: FMT.3 5 PLIP interactions: 3 interactions with chain W, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: W:H.45, W:H.167, W:E.171, A:H.72, H2O.1 MN.6: 5 residues within 4Å: Chain B: H.71, E.75, H.143 Chain V: H.168 Ligands: FMT.8 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: B:H.71, B:E.75, B:H.143, V:H.168, H2O.16 MN.7: 5 residues within 4Å: Chain B: H.72 Chain V: H.45, H.167, E.171 Ligands: FMT.8 5 PLIP interactions: 3 interactions with chain V, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: V:H.45, V:H.167, V:E.171, B:H.72, H2O.9 MN.11: 5 residues within 4Å: Chain C: H.71, E.75, H.143 Chain U: H.168 Ligands: FMT.13 5 PLIP interactions: 1 interactions with chain U, 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: U:H.168, C:H.71, C:E.75, C:H.143, H2O.25 MN.12: 5 residues within 4Å: Chain C: H.72 Chain U: H.45, H.167, E.171 Ligands: FMT.13 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: U:H.45, U:H.167, U:E.171, C:H.72, H2O.17 MN.16: 5 residues within 4Å: Chain D: H.71, E.75, H.143 Chain X: H.168 Ligands: FMT.18 5 PLIP interactions: 1 interactions with chain X, 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: X:H.168, D:H.71, D:E.75, D:H.143, H2O.33 MN.17: 5 residues within 4Å: Chain D: H.72 Chain X: H.45, H.167, E.171 Ligands: FMT.18 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: X:H.45, X:H.167, X:E.171, D:H.72, H2O.26 MN.21: 5 residues within 4Å: Chain E: H.71, E.75, H.143 Chain T: H.168 Ligands: FMT.23 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: E:H.71, E:E.75, E:H.143, T:H.168, H2O.42 MN.22: 5 residues within 4Å: Chain E: H.72 Chain T: H.45, H.167, E.171 Ligands: FMT.23 5 PLIP interactions: 3 interactions with chain T, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: T:H.45, T:H.167, T:E.171, E:H.72, H2O.34 MN.26: 5 residues within 4Å: Chain F: H.71, E.75, H.143 Chain Q: H.168 Ligands: FMT.28 5 PLIP interactions: 3 interactions with chain F, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: F:H.71, F:E.75, F:H.143, Q:H.168, H2O.50 MN.27: 5 residues within 4Å: Chain F: H.72 Chain Q: H.45, H.167, E.171 Ligands: FMT.28 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: Q:H.45, Q:H.167, Q:E.171, F:H.72, H2O.42 MN.31: 5 residues within 4Å: Chain G: H.71, E.75, H.143 Chain R: H.168 Ligands: FMT.33 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: G:H.71, G:E.75, G:H.143, R:H.168, H2O.58 MN.32: 5 residues within 4Å: Chain G: H.72 Chain R: H.45, H.167, E.171 Ligands: FMT.33 5 PLIP interactions: 3 interactions with chain R, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: R:H.45, R:H.167, R:E.171, G:H.72, H2O.51 MN.36: 5 residues within 4Å: Chain H: H.71, E.75, H.143 Chain S: H.168 Ligands: FMT.38 5 PLIP interactions: 1 interactions with chain S, 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: S:H.168, H:H.71, H:E.75, H:H.143, H2O.67 MN.37: 5 residues within 4Å: Chain H: H.72 Chain S: H.45, H.167, E.171 Ligands: FMT.38 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: S:H.45, S:H.167, S:E.171, H:H.72, H2O.59 MN.41: 5 residues within 4Å: Chain I: H.71, E.75, H.143 Chain M: H.168 Ligands: FMT.43 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: I:H.71, I:E.75, I:H.143, M:H.168, H2O.75 MN.42: 5 residues within 4Å: Chain I: H.72 Chain M: H.45, H.167, E.171 Ligands: FMT.43 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: M:H.45, M:H.167, M:E.171, I:H.72, H2O.68 MN.46: 5 residues within 4Å: Chain J: H.71, E.75, H.143 Chain P: H.168 Ligands: FMT.48 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: J:H.71, J:E.75, J:H.143, P:H.168, H2O.84 MN.47: 5 residues within 4Å: Chain J: H.72 Chain P: H.45, H.167, E.171 Ligands: FMT.48 5 PLIP interactions: 1 interactions with chain J, 3 interactions with chain P, 1 Ligand-Water interactions Metal complexes: J:H.72, P:H.45, P:H.167, P:E.171, H2O.76 MN.51: 5 residues within 4Å: Chain K: H.71, E.75, H.143 Chain O: H.168 Ligands: FMT.53 5 PLIP interactions: 1 interactions with chain O, 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: O:H.168, K:H.71, K:E.75, K:H.143, H2O.92 MN.52: 5 residues within 4Å: Chain K: H.72 Chain O: H.45, H.167, E.171 Ligands: FMT.53 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: O:H.45, O:H.167, O:E.171, K:H.72, H2O.84 MN.56: 5 residues within 4Å: Chain L: H.71, E.75, H.143 Chain N: H.168 Ligands: FMT.58 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: L:H.71, L:E.75, L:H.143, N:H.168, H2O.100 MN.57: 5 residues within 4Å: Chain L: H.72 Chain N: H.45, H.167, E.171 Ligands: FMT.58 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: N:H.45, N:H.167, N:E.171, L:H.72, H2O.93 MN.61: 5 residues within 4Å: Chain K: H.168 Chain M: H.71, E.75, H.143 Ligands: FMT.63 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: M:H.71, M:E.75, M:H.143, K:H.168, H2O.109 MN.62: 5 residues within 4Å: Chain K: H.45, H.167, E.171 Chain M: H.72 Ligands: FMT.63 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: K:H.45, K:H.167, K:E.171, M:H.72, H2O.101 MN.66: 5 residues within 4Å: Chain J: H.168 Chain N: H.71, E.75, H.143 Ligands: FMT.68 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: N:H.71, N:E.75, N:H.143, J:H.168, H2O.117 MN.67: 5 residues within 4Å: Chain J: H.45, H.167, E.171 Chain N: H.72 Ligands: FMT.68 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: J:H.45, J:H.167, J:E.171, N:H.72, H2O.110 MN.71: 5 residues within 4Å: Chain I: H.168 Chain O: H.71, E.75, H.143 Ligands: FMT.73 5 PLIP interactions: 1 interactions with chain I, 3 interactions with chain O, 1 Ligand-Water interactions Metal complexes: I:H.168, O:H.71, O:E.75, O:H.143, H2O.125 MN.72: 5 residues within 4Å: Chain I: H.45, H.167, E.171 Chain O: H.72 Ligands: FMT.73 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: I:H.45, I:H.167, I:E.171, O:H.72, H2O.118 MN.76: 5 residues within 4Å: Chain L: H.168 Chain P: H.71, E.75, H.143 Ligands: FMT.78 5 PLIP interactions: 3 interactions with chain P, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: P:H.71, P:E.75, P:H.143, L:H.168, H2O.134 MN.77: 5 residues within 4Å: Chain L: H.45, H.167, E.171 Chain P: H.72 Ligands: FMT.78 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: L:H.45, L:H.167, L:E.171, P:H.72, H2O.126 MN.81: 5 residues within 4Å: Chain H: H.168 Chain Q: H.71, E.75, H.143 Ligands: FMT.83 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: Q:H.71, Q:E.75, Q:H.143, H:H.168, H2O.142 MN.82: 5 residues within 4Å: Chain H: H.45, H.167, E.171 Chain Q: H.72 Ligands: FMT.83 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: H:H.45, H:H.167, H:E.171, Q:H.72, H2O.135 MN.86: 5 residues within 4Å: Chain E: H.168 Chain R: H.71, E.75, H.143 Ligands: FMT.88 5 PLIP interactions: 1 interactions with chain E, 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: E:H.168, R:H.71, R:E.75, R:H.143, H2O.151 MN.87: 5 residues within 4Å: Chain E: H.45, H.167, E.171 Chain R: H.72 Ligands: FMT.88 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: E:H.45, E:H.167, E:E.171, R:H.72, H2O.143 MN.91: 5 residues within 4Å: Chain F: H.168 Chain S: H.71, E.75, H.143 Ligands: FMT.93 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: S:H.71, S:E.75, S:H.143, F:H.168, H2O.159 MN.92: 5 residues within 4Å: Chain F: H.45, H.167, E.171 Chain S: H.72 Ligands: FMT.93 5 PLIP interactions: 1 interactions with chain S, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: S:H.72, F:H.45, F:H.167, F:E.171, H2O.151 MN.96: 5 residues within 4Å: Chain G: H.168 Chain T: H.71, E.75, H.143 Ligands: FMT.98 5 PLIP interactions: 1 interactions with chain G, 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: G:H.168, T:H.71, T:E.75, T:H.143, H2O.167 MN.97: 5 residues within 4Å: Chain G: H.45, H.167, E.171 Chain T: H.72 Ligands: FMT.98 5 PLIP interactions: 1 interactions with chain T, 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: T:H.72, G:H.45, G:H.167, G:E.171, H2O.160 MN.101: 5 residues within 4Å: Chain A: H.168 Chain U: H.71, E.75, H.143 Ligands: FMT.103 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: U:H.71, U:E.75, U:H.143, A:H.168, H2O.176 MN.102: 5 residues within 4Å: Chain A: H.45, H.167, E.171 Chain U: H.72 Ligands: FMT.103 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: A:H.45, A:H.167, A:E.171, U:H.72, H2O.168 MN.106: 5 residues within 4Å: Chain D: H.168 Chain V: H.71, E.75, H.143 Ligands: FMT.108 5 PLIP interactions: 1 interactions with chain D, 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: D:H.168, V:H.71, V:E.75, V:H.143, H2O.184 MN.107: 5 residues within 4Å: Chain D: H.45, H.167, E.171 Chain V: H.72 Ligands: FMT.108 5 PLIP interactions: 1 interactions with chain V, 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: V:H.72, D:H.45, D:H.167, D:E.171, H2O.177 MN.111: 5 residues within 4Å: Chain C: H.168 Chain W: H.71, E.75, H.143 Ligands: FMT.113 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: C:H.168, W:H.71, W:E.75, W:H.143, H2O.193 MN.112: 5 residues within 4Å: Chain C: H.45, H.167, E.171 Chain W: H.72 Ligands: FMT.113 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: C:H.45, C:H.167, C:E.171, W:H.72, H2O.185 MN.116: 5 residues within 4Å: Chain B: H.168 Chain X: H.71, E.75, H.143 Ligands: FMT.118 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: X:H.71, X:E.75, X:H.143, B:H.168, H2O.201 MN.117: 5 residues within 4Å: Chain B: H.45, H.167, E.171 Chain X: H.72 Ligands: FMT.118 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: B:H.45, B:H.167, B:E.171, X:H.72, H2O.193

24 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 8 residues within 4Å: Chain A: H.71, H.72, E.75 Chain W: H.167, H.168, E.171 Ligands: MN.1, MN.2 Ligand excluded by PLIP FMT.8: 8 residues within 4Å: Chain B: H.71, H.72, E.75 Chain V: H.167, H.168, E.171 Ligands: MN.6, MN.7 Ligand excluded by PLIP FMT.13: 8 residues within 4Å: Chain C: H.71, H.72, E.75 Chain U: H.167, H.168, E.171 Ligands: MN.11, MN.12 Ligand excluded by PLIP FMT.18: 8 residues within 4Å: Chain D: H.71, H.72, E.75 Chain X: H.167, H.168, E.171 Ligands: MN.16, MN.17 Ligand excluded by PLIP FMT.23: 8 residues within 4Å: Chain E: H.71, H.72, E.75 Chain T: H.167, H.168, E.171 Ligands: MN.21, MN.22 Ligand excluded by PLIP FMT.28: 8 residues within 4Å: Chain F: H.71, H.72, E.75 Chain Q: H.167, H.168, E.171 Ligands: MN.26, MN.27 Ligand excluded by PLIP FMT.33: 8 residues within 4Å: Chain G: H.71, H.72, E.75 Chain R: H.167, H.168, E.171 Ligands: MN.31, MN.32 Ligand excluded by PLIP FMT.38: 8 residues within 4Å: Chain H: H.71, H.72, E.75 Chain S: H.167, H.168, E.171 Ligands: MN.36, MN.37 Ligand excluded by PLIP FMT.43: 8 residues within 4Å: Chain I: H.71, H.72, E.75 Chain M: H.167, H.168, E.171 Ligands: MN.41, MN.42 Ligand excluded by PLIP FMT.48: 8 residues within 4Å: Chain J: H.71, H.72, E.75 Chain P: H.167, H.168, E.171 Ligands: MN.46, MN.47 Ligand excluded by PLIP FMT.53: 8 residues within 4Å: Chain K: H.71, H.72, E.75 Chain O: H.167, H.168, E.171 Ligands: MN.51, MN.52 Ligand excluded by PLIP FMT.58: 8 residues within 4Å: Chain L: H.71, H.72, E.75 Chain N: H.167, H.168, E.171 Ligands: MN.56, MN.57 Ligand excluded by PLIP FMT.63: 8 residues within 4Å: Chain K: H.167, H.168, E.171 Chain M: H.71, H.72, E.75 Ligands: MN.61, MN.62 Ligand excluded by PLIP FMT.68: 8 residues within 4Å: Chain J: H.167, H.168, E.171 Chain N: H.71, H.72, E.75 Ligands: MN.66, MN.67 Ligand excluded by PLIP FMT.73: 8 residues within 4Å: Chain I: H.167, H.168, E.171 Chain O: H.71, H.72, E.75 Ligands: MN.71, MN.72 Ligand excluded by PLIP FMT.78: 8 residues within 4Å: Chain L: H.167, H.168, E.171 Chain P: H.71, H.72, E.75 Ligands: MN.76, MN.77 Ligand excluded by PLIP FMT.83: 8 residues within 4Å: Chain H: H.167, H.168, E.171 Chain Q: H.71, H.72, E.75 Ligands: MN.81, MN.82 Ligand excluded by PLIP FMT.88: 8 residues within 4Å: Chain E: H.167, H.168, E.171 Chain R: H.71, H.72, E.75 Ligands: MN.86, MN.87 Ligand excluded by PLIP FMT.93: 8 residues within 4Å: Chain F: H.167, H.168, E.171 Chain S: H.71, H.72, E.75 Ligands: MN.91, MN.92 Ligand excluded by PLIP FMT.98: 8 residues within 4Å: Chain G: H.167, H.168, E.171 Chain T: H.71, H.72, E.75 Ligands: MN.96, MN.97 Ligand excluded by PLIP FMT.103: 8 residues within 4Å: Chain A: H.167, H.168, E.171 Chain U: H.71, H.72, E.75 Ligands: MN.101, MN.102 Ligand excluded by PLIP FMT.108: 8 residues within 4Å: Chain D: H.167, H.168, E.171 Chain V: H.71, H.72, E.75 Ligands: MN.106, MN.107 Ligand excluded by PLIP FMT.113: 8 residues within 4Å: Chain C: H.167, H.168, E.171 Chain W: H.71, H.72, E.75 Ligands: MN.111, MN.112 Ligand excluded by PLIP FMT.118: 8 residues within 4Å: Chain B: H.167, H.168, E.171 Chain X: H.71, H.72, E.75 Ligands: MN.116, MN.117 Ligand excluded by PLIP

24 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 11 residues within 4Å: Chain A: T.102, H.111, L.161 Chain H: T.102, H.111, L.161 Chain K: T.102, H.111, L.161 Ligands: TRS.39, TRS.54 Ligand excluded by PLIP TRS.9: 11 residues within 4Å: Chain B: T.102, H.111, L.161 Chain F: T.102, H.111, L.161 Chain J: T.102, H.111, L.161 Ligands: TRS.29, TRS.49 Ligand excluded by PLIP TRS.14: 11 residues within 4Å: Chain C: T.102, H.111, L.161 Chain E: T.102, H.111, L.161 Chain L: T.102, H.111, L.161 Ligands: TRS.24, TRS.59 Ligand excluded by PLIP TRS.19: 11 residues within 4Å: Chain D: T.102, H.111, L.161 Chain G: T.102, H.111, L.161 Chain I: T.102, H.111, L.161 Ligands: TRS.34, TRS.44 Ligand excluded by PLIP TRS.24: 11 residues within 4Å: Chain C: T.102, H.111, L.161 Chain E: T.102, H.111, L.161 Chain L: T.102, H.111, L.161 Ligands: TRS.14, TRS.59 Ligand excluded by PLIP TRS.29: 11 residues within 4Å: Chain B: T.102, H.111, L.161 Chain F: T.102, H.111, L.161 Chain J: T.102, H.111, L.161 Ligands: TRS.9, TRS.49 Ligand excluded by PLIP TRS.34: 11 residues within 4Å: Chain D: T.102, H.111, L.161 Chain G: T.102, H.111, L.161 Chain I: T.102, H.111, L.161 Ligands: TRS.19, TRS.44 Ligand excluded by PLIP TRS.39: 11 residues within 4Å: Chain A: T.102, H.111, L.161 Chain H: T.102, H.111, L.161 Chain K: T.102, H.111, L.161 Ligands: TRS.4, TRS.54 Ligand excluded by PLIP TRS.44: 11 residues within 4Å: Chain D: T.102, H.111, L.161 Chain G: T.102, H.111, L.161 Chain I: T.102, H.111, L.161 Ligands: TRS.19, TRS.34 Ligand excluded by PLIP TRS.49: 11 residues within 4Å: Chain B: T.102, H.111, L.161 Chain F: T.102, H.111, L.161 Chain J: T.102, H.111, L.161 Ligands: TRS.9, TRS.29 Ligand excluded by PLIP TRS.54: 11 residues within 4Å: Chain A: T.102, H.111, L.161 Chain H: T.102, H.111, L.161 Chain K: T.102, H.111, L.161 Ligands: TRS.4, TRS.39 Ligand excluded by PLIP TRS.59: 11 residues within 4Å: Chain C: T.102, H.111, L.161 Chain E: T.102, H.111, L.161 Chain L: T.102, H.111, L.161 Ligands: TRS.14, TRS.24 Ligand excluded by PLIP TRS.64: 11 residues within 4Å: Chain M: T.102, H.111, L.161 Chain T: T.102, H.111, L.161 Chain W: T.102, H.111, L.161 Ligands: TRS.99, TRS.114 Ligand excluded by PLIP TRS.69: 11 residues within 4Å: Chain N: T.102, H.111, L.161 Chain R: T.102, H.111, L.161 Chain V: T.102, H.111, L.161 Ligands: TRS.89, TRS.109 Ligand excluded by PLIP TRS.74: 11 residues within 4Å: Chain O: T.102, H.111, L.161 Chain Q: T.102, H.111, L.161 Chain X: T.102, H.111, L.161 Ligands: TRS.84, TRS.119 Ligand excluded by PLIP TRS.79: 11 residues within 4Å: Chain P: T.102, H.111, L.161 Chain S: T.102, H.111, L.161 Chain U: T.102, H.111, L.161 Ligands: TRS.94, TRS.104 Ligand excluded by PLIP TRS.84: 11 residues within 4Å: Chain O: T.102, H.111, L.161 Chain Q: T.102, H.111, L.161 Chain X: T.102, H.111, L.161 Ligands: TRS.74, TRS.119 Ligand excluded by PLIP TRS.89: 11 residues within 4Å: Chain N: T.102, H.111, L.161 Chain R: T.102, H.111, L.161 Chain V: T.102, H.111, L.161 Ligands: TRS.69, TRS.109 Ligand excluded by PLIP TRS.94: 11 residues within 4Å: Chain P: T.102, H.111, L.161 Chain S: T.102, H.111, L.161 Chain U: T.102, H.111, L.161 Ligands: TRS.79, TRS.104 Ligand excluded by PLIP TRS.99: 11 residues within 4Å: Chain M: T.102, H.111, L.161 Chain T: T.102, H.111, L.161 Chain W: T.102, H.111, L.161 Ligands: TRS.64, TRS.114 Ligand excluded by PLIP TRS.104: 11 residues within 4Å: Chain P: T.102, H.111, L.161 Chain S: T.102, H.111, L.161 Chain U: T.102, H.111, L.161 Ligands: TRS.79, TRS.94 Ligand excluded by PLIP TRS.109: 11 residues within 4Å: Chain N: T.102, H.111, L.161 Chain R: T.102, H.111, L.161 Chain V: T.102, H.111, L.161 Ligands: TRS.69, TRS.89 Ligand excluded by PLIP TRS.114: 11 residues within 4Å: Chain M: T.102, H.111, L.161 Chain T: T.102, H.111, L.161 Chain W: T.102, H.111, L.161 Ligands: TRS.64, TRS.99 Ligand excluded by PLIP TRS.119: 11 residues within 4Å: Chain O: T.102, H.111, L.161 Chain Q: T.102, H.111, L.161 Chain X: T.102, H.111, L.161 Ligands: TRS.74, TRS.84 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.40, CL.55 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.30, CL.50 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.25, CL.60 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.35, CL.45 Ligand excluded by PLIP CL.25: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.15, CL.60 Ligand excluded by PLIP CL.30: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.10, CL.50 Ligand excluded by PLIP CL.35: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.20, CL.45 Ligand excluded by PLIP CL.40: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.5, CL.55 Ligand excluded by PLIP CL.45: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.20, CL.35 Ligand excluded by PLIP CL.50: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.10, CL.30 Ligand excluded by PLIP CL.55: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.5, CL.40 Ligand excluded by PLIP CL.60: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.15, CL.25 Ligand excluded by PLIP CL.65: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.100, CL.115 Ligand excluded by PLIP CL.70: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.90, CL.110 Ligand excluded by PLIP CL.75: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.85, CL.120 Ligand excluded by PLIP CL.80: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.95, CL.105 Ligand excluded by PLIP CL.85: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.75, CL.120 Ligand excluded by PLIP CL.90: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.70, CL.110 Ligand excluded by PLIP CL.95: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.80, CL.105 Ligand excluded by PLIP CL.100: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.65, CL.115 Ligand excluded by PLIP CL.105: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.80, CL.95 Ligand excluded by PLIP CL.110: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.70, CL.90 Ligand excluded by PLIP CL.115: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.65, CL.100 Ligand excluded by PLIP CL.120: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.75, CL.85 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bisson, C. et al., Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination. Structure (2015)

Release Date

2015-06-24

Peptides

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic

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