SMTL ID : 5elw.1

A. thaliana IGPD2 in complex with the triazole-phosphonate inhibitor, (R)-C348, to 1.36A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-24-mer

Ligands

48 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain K: H.168 Chain M: H.71, E.75, H.143 Ligands: 5LD.3 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: M:H.71, M:E.75, M:H.143, K:H.168, H2O.6 MN.2: 5 residues within 4Å: Chain K: H.45, H.167, E.171 Chain M: H.72 Ligands: 5LD.3 4 PLIP interactions: 1 interactions with chain M, 3 interactions with chain K Metal complexes: M:H.72, K:H.45, K:H.167, K:E.171 MN.8: 5 residues within 4Å: Chain J: H.168 Chain N: H.71, E.75, H.143 Ligands: 5LD.10 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: N:H.71, N:E.75, N:H.143, J:H.168, H2O.14 MN.9: 5 residues within 4Å: Chain J: H.45, H.167, E.171 Chain N: H.72 Ligands: 5LD.10 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain N Metal complexes: J:H.45, J:H.167, J:E.171, N:H.72 MN.15: 5 residues within 4Å: Chain L: H.168 Chain P: H.71, E.75, H.143 Ligands: 5LD.17 5 PLIP interactions: 3 interactions with chain P, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: P:H.71, P:E.75, P:H.143, L:H.168, H2O.21 MN.16: 5 residues within 4Å: Chain L: H.45, H.167, E.171 Chain P: H.72 Ligands: 5LD.17 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain P Metal complexes: L:H.45, L:H.167, L:E.171, P:H.72 MN.22: 5 residues within 4Å: Chain I: H.168 Chain O: H.71, E.75, H.143 Ligands: 5LD.24 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: O:H.71, O:E.75, O:H.143, I:H.168, H2O.29 MN.23: 5 residues within 4Å: Chain I: H.45, H.167, E.171 Chain O: H.72 Ligands: 5LD.24 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain O Metal complexes: I:H.45, I:H.167, I:E.171, O:H.72 MN.29: 5 residues within 4Å: Chain C: H.168 Chain W: H.71, E.75, H.143 Ligands: 5LD.31 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: C:H.168, W:H.71, W:E.75, W:H.143, H2O.37 MN.30: 5 residues within 4Å: Chain C: H.45, H.167, E.171 Chain W: H.72 Ligands: 5LD.31 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain W Metal complexes: C:H.45, C:H.167, C:E.171, W:H.72 MN.36: 5 residues within 4Å: Chain B: H.168 Chain X: H.71, E.75, H.143 Ligands: 5LD.38 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: X:H.71, X:E.75, X:H.143, B:H.168, H2O.45 MN.37: 5 residues within 4Å: Chain B: H.45, H.167, E.171 Chain X: H.72 Ligands: 5LD.38 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain X Metal complexes: B:H.45, B:H.167, B:E.171, X:H.72 MN.43: 5 residues within 4Å: Chain D: H.168 Chain V: H.71, E.75, H.143 Ligands: 5LD.45 5 PLIP interactions: 3 interactions with chain V, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: V:H.71, V:E.75, V:H.143, D:H.168, H2O.53 MN.44: 5 residues within 4Å: Chain D: H.45, H.167, E.171 Chain V: H.72 Ligands: 5LD.45 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain V Metal complexes: D:H.45, D:H.167, D:E.171, V:H.72 MN.50: 5 residues within 4Å: Chain A: H.168 Chain U: H.71, E.75, H.143 Ligands: 5LD.52 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: U:H.71, U:E.75, U:H.143, A:H.168, H2O.61 MN.51: 5 residues within 4Å: Chain A: H.45, H.167, E.171 Chain U: H.72 Ligands: 5LD.52 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain U Metal complexes: A:H.45, A:H.167, A:E.171, U:H.72 MN.57: 5 residues within 4Å: Chain G: H.168 Chain T: H.71, E.75, H.143 Ligands: 5LD.59 5 PLIP interactions: 3 interactions with chain T, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: T:H.71, T:E.75, T:H.143, G:H.168, H2O.69 MN.58: 5 residues within 4Å: Chain G: H.45, H.167, E.171 Chain T: H.72 Ligands: 5LD.59 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain T Metal complexes: G:H.45, G:H.167, G:E.171, T:H.72 MN.64: 5 residues within 4Å: Chain F: H.168 Chain S: H.71, E.75, H.143 Ligands: 5LD.66 5 PLIP interactions: 1 interactions with chain F, 3 interactions with chain S, 1 Ligand-Water interactions Metal complexes: F:H.168, S:H.71, S:E.75, S:H.143, H2O.76 MN.65: 5 residues within 4Å: Chain F: H.45, H.167, E.171 Chain S: H.72 Ligands: 5LD.66 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain S Metal complexes: F:H.45, F:H.167, F:E.171, S:H.72 MN.71: 5 residues within 4Å: Chain H: H.168 Chain Q: H.71, E.75, H.143 Ligands: 5LD.73 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: Q:H.71, Q:E.75, Q:H.143, H:H.168, H2O.84 MN.72: 5 residues within 4Å: Chain H: H.45, H.167, E.171 Chain Q: H.72 Ligands: 5LD.73 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain Q Metal complexes: H:H.45, H:H.167, H:E.171, Q:H.72 MN.78: 5 residues within 4Å: Chain E: H.168 Chain R: H.71, E.75, H.143 Ligands: 5LD.80 5 PLIP interactions: 3 interactions with chain R, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: R:H.71, R:E.75, R:H.143, E:H.168, H2O.92 MN.79: 5 residues within 4Å: Chain E: H.45, H.167, E.171 Chain R: H.72 Ligands: 5LD.80 4 PLIP interactions: 1 interactions with chain R, 3 interactions with chain E Metal complexes: R:H.72, E:H.45, E:H.167, E:E.171 MN.85: 5 residues within 4Å: Chain A: H.71, E.75, H.143 Chain W: H.168 Ligands: 5LD.87 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: A:H.71, A:E.75, A:H.143, W:H.168, H2O.100 MN.86: 5 residues within 4Å: Chain A: H.72 Chain W: H.45, H.167, E.171 Ligands: 5LD.87 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain W Metal complexes: A:H.72, W:H.45, W:H.167, W:E.171 MN.92: 5 residues within 4Å: Chain B: H.71, E.75, H.143 Chain V: H.168 Ligands: 5LD.94 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: B:H.71, B:E.75, B:H.143, V:H.168, H2O.108 MN.93: 5 residues within 4Å: Chain B: H.72 Chain V: H.45, H.167, E.171 Ligands: 5LD.94 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain V Metal complexes: B:H.72, V:H.45, V:H.167, V:E.171 MN.99: 5 residues within 4Å: Chain D: H.71, E.75, H.143 Chain X: H.168 Ligands: 5LD.101 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: D:H.71, D:E.75, D:H.143, X:H.168, H2O.116 MN.100: 5 residues within 4Å: Chain D: H.72 Chain X: H.45, H.167, E.171 Ligands: 5LD.101 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain D Metal complexes: X:H.45, X:H.167, X:E.171, D:H.72 MN.106: 5 residues within 4Å: Chain C: H.71, E.75, H.143 Chain U: H.168 Ligands: 5LD.108 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: C:H.71, C:E.75, C:H.143, U:H.168, H2O.123 MN.107: 5 residues within 4Å: Chain C: H.72 Chain U: H.45, H.167, E.171 Ligands: 5LD.108 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain U Metal complexes: C:H.72, U:H.45, U:H.167, U:E.171 MN.113: 5 residues within 4Å: Chain K: H.71, E.75, H.143 Chain O: H.168 Ligands: 5LD.115 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: K:H.71, K:E.75, K:H.143, O:H.168, H2O.131 MN.114: 5 residues within 4Å: Chain K: H.72 Chain O: H.45, H.167, E.171 Ligands: 5LD.115 4 PLIP interactions: 3 interactions with chain O, 1 interactions with chain K Metal complexes: O:H.45, O:H.167, O:E.171, K:H.72 MN.120: 5 residues within 4Å: Chain L: H.71, E.75, H.143 Chain N: H.168 Ligands: 5LD.122 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: L:H.71, L:E.75, L:H.143, N:H.168, H2O.139 MN.121: 5 residues within 4Å: Chain L: H.72 Chain N: H.45, H.167, E.171 Ligands: 5LD.122 4 PLIP interactions: 1 interactions with chain L, 3 interactions with chain N Metal complexes: L:H.72, N:H.45, N:H.167, N:E.171 MN.127: 5 residues within 4Å: Chain J: H.71, E.75, H.143 Chain P: H.168 Ligands: 5LD.129 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: J:H.71, J:E.75, J:H.143, P:H.168, H2O.147 MN.128: 5 residues within 4Å: Chain J: H.72 Chain P: H.45, H.167, E.171 Ligands: 5LD.129 4 PLIP interactions: 1 interactions with chain J, 3 interactions with chain P Metal complexes: J:H.72, P:H.45, P:H.167, P:E.171 MN.134: 5 residues within 4Å: Chain I: H.71, E.75, H.143 Chain M: H.168 Ligands: 5LD.136 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: I:H.71, I:E.75, I:H.143, M:H.168, H2O.155 MN.135: 5 residues within 4Å: Chain I: H.72 Chain M: H.45, H.167, E.171 Ligands: 5LD.136 4 PLIP interactions: 1 interactions with chain I, 3 interactions with chain M Metal complexes: I:H.72, M:H.45, M:H.167, M:E.171 MN.141: 5 residues within 4Å: Chain H: H.71, E.75, H.143 Chain S: H.168 Ligands: 5LD.143 5 PLIP interactions: 1 interactions with chain S, 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: S:H.168, H:H.71, H:E.75, H:H.143, H2O.163 MN.142: 5 residues within 4Å: Chain H: H.72 Chain S: H.45, H.167, E.171 Ligands: 5LD.143 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain S Metal complexes: H:H.72, S:H.45, S:H.167, S:E.171 MN.148: 5 residues within 4Å: Chain G: H.71, E.75, H.143 Chain R: H.168 Ligands: 5LD.150 5 PLIP interactions: 1 interactions with chain R, 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: R:H.168, G:H.71, G:E.75, G:H.143, H2O.171 MN.149: 5 residues within 4Å: Chain G: H.72 Chain R: H.45, H.167, E.171 Ligands: 5LD.150 4 PLIP interactions: 1 interactions with chain G, 3 interactions with chain R Metal complexes: G:H.72, R:H.45, R:H.167, R:E.171 MN.155: 5 residues within 4Å: Chain E: H.71, E.75, H.143 Chain T: H.168 Ligands: 5LD.157 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: E:H.71, E:E.75, E:H.143, T:H.168, H2O.178 MN.156: 5 residues within 4Å: Chain E: H.72 Chain T: H.45, H.167, E.171 Ligands: 5LD.157 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain T Metal complexes: E:H.72, T:H.45, T:H.167, T:E.171 MN.162: 5 residues within 4Å: Chain F: H.71, E.75, H.143 Chain Q: H.168 Ligands: 5LD.164 5 PLIP interactions: 3 interactions with chain F, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: F:H.71, F:E.75, F:H.143, Q:H.168, H2O.186 MN.163: 5 residues within 4Å: Chain F: H.72 Chain Q: H.45, H.167, E.171 Ligands: 5LD.164 4 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain F Metal complexes: Q:H.45, Q:H.167, Q:E.171, F:H.72

24 x 5LD: [(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid(Non-covalent)

5LD.3: 16 residues within 4Å: Chain A: R.97, R.119, S.197, S.198, K.199 Chain K: H.45, H.167, H.168, E.171, K.175 Chain M: E.19, H.71, H.72, E.75 Ligands: MN.1, MN.2 10 PLIP interactions: 7 interactions with chain A, 2 interactions with chain K, 1 interactions with chain M Hydrogen bonds: A:R.97, A:R.97, A:R.119, A:R.119, A:S.197, A:S.198, K:K.175 Water bridges: A:D.115, K:K.175, M:E.19 5LD.10: 16 residues within 4Å: Chain B: R.97, R.119, S.197, S.198, K.199 Chain J: H.45, H.167, H.168, E.171, K.175 Chain N: E.19, H.71, H.72, E.75 Ligands: MN.8, MN.9 10 PLIP interactions: 7 interactions with chain B, 1 interactions with chain N, 2 interactions with chain J Hydrogen bonds: B:R.97, B:R.97, B:R.119, B:R.119, B:S.197, B:S.198, J:K.175 Water bridges: B:D.115, N:E.19, J:K.175 5LD.17: 16 residues within 4Å: Chain C: R.97, R.119, S.197, S.198, K.199 Chain L: H.45, H.167, H.168, E.171, K.175 Chain P: E.19, H.71, H.72, E.75 Ligands: MN.15, MN.16 9 PLIP interactions: 2 interactions with chain L, 7 interactions with chain C Hydrogen bonds: L:K.175, C:R.97, C:R.97, C:R.119, C:R.119, C:S.197, C:S.198 Water bridges: L:K.175, C:D.115 5LD.24: 16 residues within 4Å: Chain D: R.97, R.119, S.197, S.198, K.199 Chain I: H.45, H.167, H.168, E.171, K.175 Chain O: E.19, H.71, H.72, E.75 Ligands: MN.22, MN.23 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain I Hydrogen bonds: D:R.97, D:R.97, D:R.119, D:R.119, D:S.197, D:S.198, I:K.175 Water bridges: D:D.115, I:K.175 5LD.31: 16 residues within 4Å: Chain C: H.45, H.167, H.168, E.171, K.175 Chain E: R.97, R.119, S.197, S.198, K.199 Chain W: E.19, H.71, H.72, E.75 Ligands: MN.29, MN.30 10 PLIP interactions: 7 interactions with chain E, 2 interactions with chain C, 1 interactions with chain W Hydrogen bonds: E:R.97, E:R.97, E:R.119, E:R.119, E:S.197, E:S.198, C:K.175 Water bridges: E:D.115, C:K.175, W:E.19 5LD.38: 16 residues within 4Å: Chain B: H.45, H.167, H.168, E.171, K.175 Chain F: R.97, R.119, S.197, S.198, K.199 Chain X: E.19, H.71, H.72, E.75 Ligands: MN.36, MN.37 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:R.97, F:R.97, F:R.119, F:R.119, F:S.197, F:S.198, B:K.175 Water bridges: F:D.115, B:K.175 5LD.45: 16 residues within 4Å: Chain D: H.45, H.167, H.168, E.171, K.175 Chain G: R.97, R.119, S.197, S.198, K.199 Chain V: E.19, H.71, H.72, E.75 Ligands: MN.43, MN.44 10 PLIP interactions: 7 interactions with chain G, 1 interactions with chain V, 2 interactions with chain D Hydrogen bonds: G:R.97, G:R.97, G:R.119, G:R.119, G:S.197, G:S.198, D:K.175 Water bridges: G:D.115, V:E.19, D:K.175 5LD.52: 16 residues within 4Å: Chain A: H.45, H.167, H.168, E.171, K.175 Chain H: R.97, R.119, S.197, S.198, K.199 Chain U: E.19, H.71, H.72, E.75 Ligands: MN.50, MN.51 9 PLIP interactions: 7 interactions with chain H, 2 interactions with chain A Hydrogen bonds: H:R.97, H:R.97, H:R.119, H:R.119, H:S.197, H:S.198, A:K.175 Water bridges: H:D.115, A:K.175 5LD.59: 16 residues within 4Å: Chain G: H.45, H.167, H.168, E.171, K.175 Chain I: R.97, R.119, S.197, S.198, K.199 Chain T: E.19, H.71, H.72, E.75 Ligands: MN.57, MN.58 10 PLIP interactions: 7 interactions with chain I, 2 interactions with chain G, 1 interactions with chain T Hydrogen bonds: I:R.97, I:R.97, I:R.119, I:R.119, I:S.197, I:S.198, G:K.175 Water bridges: I:D.115, G:K.175, T:E.19 5LD.66: 16 residues within 4Å: Chain F: H.45, H.167, H.168, E.171, K.175 Chain J: R.97, R.119, S.197, S.198, K.199 Chain S: E.19, H.71, H.72, E.75 Ligands: MN.64, MN.65 9 PLIP interactions: 7 interactions with chain J, 2 interactions with chain F Hydrogen bonds: J:R.97, J:R.97, J:R.119, J:R.119, J:S.197, J:S.198, F:K.175 Water bridges: J:D.115, F:K.175 5LD.73: 16 residues within 4Å: Chain H: H.45, H.167, H.168, E.171, K.175 Chain K: R.97, R.119, S.197, S.198, K.199 Chain Q: E.19, H.71, H.72, E.75 Ligands: MN.71, MN.72 9 PLIP interactions: 7 interactions with chain K, 2 interactions with chain H Hydrogen bonds: K:R.97, K:R.97, K:R.119, K:R.119, K:S.197, K:S.198, H:K.175 Water bridges: K:D.115, H:K.175 5LD.80: 16 residues within 4Å: Chain E: H.45, H.167, H.168, E.171, K.175 Chain L: R.97, R.119, S.197, S.198, K.199 Chain R: E.19, H.71, H.72, E.75 Ligands: MN.78, MN.79 10 PLIP interactions: 7 interactions with chain L, 1 interactions with chain R, 2 interactions with chain E Hydrogen bonds: L:R.97, L:R.97, L:R.119, L:R.119, L:S.197, L:S.198, E:K.175 Water bridges: L:D.115, R:E.19, E:K.175 5LD.87: 16 residues within 4Å: Chain A: E.19, H.71, H.72, E.75 Chain M: R.97, R.119, S.197, S.198, K.199 Chain W: H.45, H.167, H.168, E.171, K.175 Ligands: MN.85, MN.86 9 PLIP interactions: 7 interactions with chain M, 2 interactions with chain W Hydrogen bonds: M:R.97, M:R.97, M:R.119, M:R.119, M:S.197, M:S.198, W:K.175 Water bridges: M:D.115, W:K.175 5LD.94: 16 residues within 4Å: Chain B: E.19, H.71, H.72, E.75 Chain N: R.97, R.119, S.197, S.198, K.199 Chain V: H.45, H.167, H.168, E.171, K.175 Ligands: MN.92, MN.93 9 PLIP interactions: 7 interactions with chain N, 2 interactions with chain V Hydrogen bonds: N:R.97, N:R.97, N:R.119, N:R.119, N:S.197, N:S.198, V:K.175 Water bridges: N:D.115, V:K.175 5LD.101: 16 residues within 4Å: Chain D: E.19, H.71, H.72, E.75 Chain O: R.97, R.119, S.197, S.198, K.199 Chain X: H.45, H.167, H.168, E.171, K.175 Ligands: MN.99, MN.100 10 PLIP interactions: 7 interactions with chain O, 1 interactions with chain D, 2 interactions with chain X Hydrogen bonds: O:R.97, O:R.97, O:R.119, O:R.119, O:S.197, O:S.198, X:K.175 Water bridges: O:D.115, D:E.19, X:K.175 5LD.108: 16 residues within 4Å: Chain C: E.19, H.71, H.72, E.75 Chain P: R.97, R.119, S.197, S.198, K.199 Chain U: H.45, H.167, H.168, E.171, K.175 Ligands: MN.106, MN.107 10 PLIP interactions: 1 interactions with chain C, 7 interactions with chain P, 2 interactions with chain U Water bridges: C:E.19, P:D.115, U:K.175 Hydrogen bonds: P:R.97, P:R.97, P:R.119, P:R.119, P:S.197, P:S.198, U:K.175 5LD.115: 16 residues within 4Å: Chain K: E.19, H.71, H.72, E.75 Chain O: H.45, H.167, H.168, E.171, K.175 Chain Q: R.97, R.119, S.197, S.198, K.199 Ligands: MN.113, MN.114 9 PLIP interactions: 7 interactions with chain Q, 2 interactions with chain O Hydrogen bonds: Q:R.97, Q:R.97, Q:R.119, Q:R.119, Q:S.197, Q:S.198, O:K.175 Water bridges: Q:D.115, O:K.175 5LD.122: 16 residues within 4Å: Chain L: E.19, H.71, H.72, E.75 Chain N: H.45, H.167, H.168, E.171, K.175 Chain R: R.97, R.119, S.197, S.198, K.199 Ligands: MN.120, MN.121 10 PLIP interactions: 7 interactions with chain R, 1 interactions with chain L, 2 interactions with chain N Hydrogen bonds: R:R.97, R:R.97, R:R.119, R:R.119, R:S.197, R:S.198, N:K.175 Water bridges: R:D.115, L:E.19, N:K.175 5LD.129: 16 residues within 4Å: Chain J: E.19, H.71, H.72, E.75 Chain P: H.45, H.167, H.168, E.171, K.175 Chain S: R.97, R.119, S.197, S.198, K.199 Ligands: MN.127, MN.128 9 PLIP interactions: 2 interactions with chain P, 7 interactions with chain S Hydrogen bonds: P:K.175, S:R.97, S:R.97, S:R.119, S:R.119, S:S.197, S:S.198 Water bridges: P:K.175, S:D.115 5LD.136: 16 residues within 4Å: Chain I: E.19, H.71, H.72, E.75 Chain M: H.45, H.167, H.168, E.171, K.175 Chain T: R.97, R.119, S.197, S.198, K.199 Ligands: MN.134, MN.135 10 PLIP interactions: 7 interactions with chain T, 2 interactions with chain M, 1 interactions with chain I Hydrogen bonds: T:R.97, T:R.97, T:R.119, T:R.119, T:S.197, T:S.198, M:K.175 Water bridges: T:D.115, M:K.175, I:E.19 5LD.143: 16 residues within 4Å: Chain H: E.19, H.71, H.72, E.75 Chain S: H.45, H.167, H.168, E.171, K.175 Chain U: R.97, R.119, S.197, S.198, K.199 Ligands: MN.141, MN.142 9 PLIP interactions: 7 interactions with chain U, 2 interactions with chain S Hydrogen bonds: U:R.97, U:R.97, U:R.119, U:R.119, U:S.197, U:S.198, S:K.175 Water bridges: U:D.115, S:K.175 5LD.150: 16 residues within 4Å: Chain G: E.19, H.71, H.72, E.75 Chain R: H.45, H.167, H.168, E.171, K.175 Chain V: R.97, R.119, S.197, S.198, K.199 Ligands: MN.148, MN.149 10 PLIP interactions: 1 interactions with chain G, 2 interactions with chain R, 7 interactions with chain V Water bridges: G:E.19, R:K.175, V:D.115 Hydrogen bonds: R:K.175, V:R.97, V:R.97, V:R.119, V:R.119, V:S.197, V:S.198 5LD.157: 16 residues within 4Å: Chain E: E.19, H.71, H.72, E.75 Chain T: H.45, H.167, H.168, E.171, K.175 Chain W: R.97, R.119, S.197, S.198, K.199 Ligands: MN.155, MN.156 10 PLIP interactions: 7 interactions with chain W, 1 interactions with chain E, 2 interactions with chain T Hydrogen bonds: W:R.97, W:R.97, W:R.119, W:R.119, W:S.197, W:S.198, T:K.175 Water bridges: W:D.115, E:E.19, T:K.175 5LD.164: 16 residues within 4Å: Chain F: E.19, H.71, H.72, E.75 Chain Q: H.45, H.167, H.168, E.171, K.175 Chain X: R.97, R.119, S.197, S.198, K.199 Ligands: MN.162, MN.163 9 PLIP interactions: 7 interactions with chain X, 2 interactions with chain Q Hydrogen bonds: X:R.97, X:R.97, X:R.119, X:R.119, X:S.197, X:S.198, Q:K.175 Water bridges: X:D.115, Q:K.175

48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain B: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain C: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain C: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain D: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain D: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.32: 5 residues within 4Å: Chain E: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.33: 6 residues within 4Å: Chain E: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.39: 5 residues within 4Å: Chain F: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.40: 6 residues within 4Å: Chain F: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain G: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.47: 6 residues within 4Å: Chain G: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.53: 5 residues within 4Å: Chain H: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.54: 6 residues within 4Å: Chain H: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.60: 5 residues within 4Å: Chain I: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.61: 6 residues within 4Å: Chain I: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.67: 5 residues within 4Å: Chain J: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.68: 6 residues within 4Å: Chain J: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.74: 5 residues within 4Å: Chain K: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.75: 6 residues within 4Å: Chain K: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.81: 5 residues within 4Å: Chain L: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.82: 6 residues within 4Å: Chain L: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.88: 5 residues within 4Å: Chain M: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.89: 6 residues within 4Å: Chain M: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.95: 5 residues within 4Å: Chain N: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.96: 6 residues within 4Å: Chain N: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.102: 5 residues within 4Å: Chain O: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.103: 6 residues within 4Å: Chain O: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.109: 5 residues within 4Å: Chain P: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.110: 6 residues within 4Å: Chain P: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.116: 5 residues within 4Å: Chain Q: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.117: 6 residues within 4Å: Chain Q: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.123: 5 residues within 4Å: Chain R: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.124: 6 residues within 4Å: Chain R: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.130: 5 residues within 4Å: Chain S: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.131: 6 residues within 4Å: Chain S: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.137: 5 residues within 4Å: Chain T: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.138: 6 residues within 4Å: Chain T: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.144: 5 residues within 4Å: Chain U: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.145: 6 residues within 4Å: Chain U: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.151: 5 residues within 4Å: Chain V: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.152: 6 residues within 4Å: Chain V: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.158: 5 residues within 4Å: Chain W: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.159: 6 residues within 4Å: Chain W: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP EDO.165: 5 residues within 4Å: Chain X: R.9, K.93, G.94, I.95, S.187 Ligand excluded by PLIP EDO.166: 6 residues within 4Å: Chain X: N.21, V.22, S.23, R.61, A.62, T.63 Ligand excluded by PLIP

24 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 11 residues within 4Å: Chain A: D.100, F.101, Q.183 Chain H: D.100, F.101, Q.183 Chain K: D.100, F.101, Q.183 Ligands: TRS.55, TRS.76 Ligand excluded by PLIP TRS.13: 11 residues within 4Å: Chain B: D.100, F.101, Q.183 Chain F: D.100, F.101, Q.183 Chain J: D.100, F.101, Q.183 Ligands: TRS.41, TRS.69 Ligand excluded by PLIP TRS.20: 11 residues within 4Å: Chain C: D.100, F.101, Q.183 Chain E: D.100, F.101, Q.183 Chain L: D.100, F.101, Q.183 Ligands: TRS.34, TRS.83 Ligand excluded by PLIP TRS.27: 11 residues within 4Å: Chain D: D.100, F.101, Q.183 Chain G: D.100, F.101, Q.183 Chain I: D.100, F.101, Q.183 Ligands: TRS.48, TRS.62 Ligand excluded by PLIP TRS.34: 11 residues within 4Å: Chain C: D.100, F.101, Q.183 Chain E: D.100, F.101, Q.183 Chain L: D.100, F.101, Q.183 Ligands: TRS.20, TRS.83 Ligand excluded by PLIP TRS.41: 11 residues within 4Å: Chain B: D.100, F.101, Q.183 Chain F: D.100, F.101, Q.183 Chain J: D.100, F.101, Q.183 Ligands: TRS.13, TRS.69 Ligand excluded by PLIP TRS.48: 11 residues within 4Å: Chain D: D.100, F.101, Q.183 Chain G: D.100, F.101, Q.183 Chain I: D.100, F.101, Q.183 Ligands: TRS.27, TRS.62 Ligand excluded by PLIP TRS.55: 11 residues within 4Å: Chain A: D.100, F.101, Q.183 Chain H: D.100, F.101, Q.183 Chain K: D.100, F.101, Q.183 Ligands: TRS.6, TRS.76 Ligand excluded by PLIP TRS.62: 11 residues within 4Å: Chain D: D.100, F.101, Q.183 Chain G: D.100, F.101, Q.183 Chain I: D.100, F.101, Q.183 Ligands: TRS.27, TRS.48 Ligand excluded by PLIP TRS.69: 11 residues within 4Å: Chain B: D.100, F.101, Q.183 Chain F: D.100, F.101, Q.183 Chain J: D.100, F.101, Q.183 Ligands: TRS.13, TRS.41 Ligand excluded by PLIP TRS.76: 11 residues within 4Å: Chain A: D.100, F.101, Q.183 Chain H: D.100, F.101, Q.183 Chain K: D.100, F.101, Q.183 Ligands: TRS.6, TRS.55 Ligand excluded by PLIP TRS.83: 11 residues within 4Å: Chain C: D.100, F.101, Q.183 Chain E: D.100, F.101, Q.183 Chain L: D.100, F.101, Q.183 Ligands: TRS.20, TRS.34 Ligand excluded by PLIP TRS.90: 11 residues within 4Å: Chain M: D.100, F.101, Q.183 Chain T: D.100, F.101, Q.183 Chain W: D.100, F.101, Q.183 Ligands: TRS.139, TRS.160 Ligand excluded by PLIP TRS.97: 11 residues within 4Å: Chain N: D.100, F.101, Q.183 Chain R: D.100, F.101, Q.183 Chain V: D.100, F.101, Q.183 Ligands: TRS.125, TRS.153 Ligand excluded by PLIP TRS.104: 11 residues within 4Å: Chain O: D.100, F.101, Q.183 Chain Q: D.100, F.101, Q.183 Chain X: D.100, F.101, Q.183 Ligands: TRS.118, TRS.167 Ligand excluded by PLIP TRS.111: 11 residues within 4Å: Chain P: D.100, F.101, Q.183 Chain S: D.100, F.101, Q.183 Chain U: D.100, F.101, Q.183 Ligands: TRS.132, TRS.146 Ligand excluded by PLIP TRS.118: 11 residues within 4Å: Chain O: D.100, F.101, Q.183 Chain Q: D.100, F.101, Q.183 Chain X: D.100, F.101, Q.183 Ligands: TRS.104, TRS.167 Ligand excluded by PLIP TRS.125: 11 residues within 4Å: Chain N: D.100, F.101, Q.183 Chain R: D.100, F.101, Q.183 Chain V: D.100, F.101, Q.183 Ligands: TRS.97, TRS.153 Ligand excluded by PLIP TRS.132: 11 residues within 4Å: Chain P: D.100, F.101, Q.183 Chain S: D.100, F.101, Q.183 Chain U: D.100, F.101, Q.183 Ligands: TRS.111, TRS.146 Ligand excluded by PLIP TRS.139: 11 residues within 4Å: Chain M: D.100, F.101, Q.183 Chain T: D.100, F.101, Q.183 Chain W: D.100, F.101, Q.183 Ligands: TRS.90, TRS.160 Ligand excluded by PLIP TRS.146: 11 residues within 4Å: Chain P: D.100, F.101, Q.183 Chain S: D.100, F.101, Q.183 Chain U: D.100, F.101, Q.183 Ligands: TRS.111, TRS.132 Ligand excluded by PLIP TRS.153: 11 residues within 4Å: Chain N: D.100, F.101, Q.183 Chain R: D.100, F.101, Q.183 Chain V: D.100, F.101, Q.183 Ligands: TRS.97, TRS.125 Ligand excluded by PLIP TRS.160: 11 residues within 4Å: Chain M: D.100, F.101, Q.183 Chain T: D.100, F.101, Q.183 Chain W: D.100, F.101, Q.183 Ligands: TRS.90, TRS.139 Ligand excluded by PLIP TRS.167: 11 residues within 4Å: Chain O: D.100, F.101, Q.183 Chain Q: D.100, F.101, Q.183 Chain X: D.100, F.101, Q.183 Ligands: TRS.104, TRS.118 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.56, CL.77 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.42, CL.70 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.35, CL.84 Ligand excluded by PLIP CL.28: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.49, CL.63 Ligand excluded by PLIP CL.35: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.21, CL.84 Ligand excluded by PLIP CL.42: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.14, CL.70 Ligand excluded by PLIP CL.49: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.28, CL.63 Ligand excluded by PLIP CL.56: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.7, CL.77 Ligand excluded by PLIP CL.63: 5 residues within 4Å: Chain D: R.159 Chain G: R.159 Chain I: R.159 Ligands: CL.28, CL.49 Ligand excluded by PLIP CL.70: 5 residues within 4Å: Chain B: R.159 Chain F: R.159 Chain J: R.159 Ligands: CL.14, CL.42 Ligand excluded by PLIP CL.77: 5 residues within 4Å: Chain A: R.159 Chain H: R.159 Chain K: R.159 Ligands: CL.7, CL.56 Ligand excluded by PLIP CL.84: 5 residues within 4Å: Chain C: R.159 Chain E: R.159 Chain L: R.159 Ligands: CL.21, CL.35 Ligand excluded by PLIP CL.91: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.140, CL.161 Ligand excluded by PLIP CL.98: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.126, CL.154 Ligand excluded by PLIP CL.105: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.119, CL.168 Ligand excluded by PLIP CL.112: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.133, CL.147 Ligand excluded by PLIP CL.119: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.105, CL.168 Ligand excluded by PLIP CL.126: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.98, CL.154 Ligand excluded by PLIP CL.133: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.112, CL.147 Ligand excluded by PLIP CL.140: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.91, CL.161 Ligand excluded by PLIP CL.147: 5 residues within 4Å: Chain P: R.159 Chain S: R.159 Chain U: R.159 Ligands: CL.112, CL.133 Ligand excluded by PLIP CL.154: 5 residues within 4Å: Chain N: R.159 Chain R: R.159 Chain V: R.159 Ligands: CL.98, CL.126 Ligand excluded by PLIP CL.161: 5 residues within 4Å: Chain M: R.159 Chain T: R.159 Chain W: R.159 Ligands: CL.91, CL.140 Ligand excluded by PLIP CL.168: 5 residues within 4Å: Chain O: R.159 Chain Q: R.159 Chain X: R.159 Ligands: CL.105, CL.119 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bisson, C. et al., Mirror-Image Packing Provides a Molecular Basis for the Nanomolar Equipotency of Enantiomers of an Experimental Herbicide. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-10-05

Peptides

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic

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