4rku.1 | SWISS-MODEL Template Library

SMTL ID : 4rku.1

Crystal structure of plant Photosystem I at 3 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x PQN: PHYLLOQUINONE(Non-covalent)

21 x BCR: BETA-CAROTENE(Non-covalent)

5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

157 x CLA: CHLOROPHYLL A(Non-covalent)(Non-functional Binders)(Covalent)

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.53:	12 residues within 4Å: Chain A: C.544, G.546, P.547, C.553, I.690, R.694 Chain B: C.557, G.559, P.560, C.566, W.665, I.700 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, Metal complexes: B:C.557, B:C.566, A:C.544, A:C.553
SF4.107:	12 residues within 4Å: Chain C: C.20, T.22, V.24, L.25, C.47, V.48, G.49, C.50, K.51, R.52, C.53, V.66 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.20, C:C.47, C:C.50, C:C.53
SF4.108:	11 residues within 4Å: Chain C: C.10, I.11, G.12, C.13, T.14, C.16, A.39, C.57, P.58, T.59, S.63 3 PLIP interactions: 3 interactions with chain C, Metal complexes: C:C.10, C:C.13, C:C.16

1 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)

1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)

2 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

6 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)(Covalent)

1 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)

1 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Mazor, Y. et al., Crystal structure of plant Photosystem I at 3.1 Angstrom resolution. To be Published

Release Date

2015-02-04

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit II, chloroplastic: D
Photosystem I reaction center subunit IV B, chloroplastic: E
Photosystem I reaction center subunit III, chloroplastic: F
Photosystem I reaction center subunit V, chloroplastic: G
Photosystem I reaction center subunit VI, chloroplastic: H
Photosystem I reaction center subunit VIII: I
Photosystem I reaction center subunit IX: J
Photosystem I reaction center subunit X psaK: K
Photosystem I reaction center subunit XI, chloroplastic: L
Photosystem I-N subunit: M
Chlorophyll a-b binding protein 6A, chloroplastic: N
Type II chlorophyll a/b binding protein from photosystem I: O
Chlorophyll a-b binding protein 3, chloroplastic: P
Chlorophyll a-b binding protein P4, chloroplastic: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
N

N
1

O
2

P
3

Q
4

Membrane

We predict this structure to be a membrane protein.
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Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II, chloroplastic

Photosystem I reaction center subunit IV B, chloroplastic

Photosystem I reaction center subunit III, chloroplastic

Photosystem I reaction center subunit V, chloroplastic

Photosystem I reaction center subunit VI, chloroplastic

Photosystem I reaction center subunit VIII

Photosystem I reaction center subunit IX

Photosystem I reaction center subunit X psaK

Photosystem I reaction center subunit XI, chloroplastic

Photosystem I-N subunit

Chlorophyll a-b binding protein 6A, chloroplastic

Type II chlorophyll a/b binding protein from photosystem I

Chlorophyll a-b binding protein 3, chloroplastic

Chlorophyll a-b binding protein P4, chloroplastic

Related Entries With Identical Sequence

2o01.1 | 4xk8.1 | 4xk8.2 | 4y28.1 | 5l8r.1 | 6ly5.1 | 6yac.1 | 6yez.1 | 6zoo.1 | 6zxs.1 | 7dkz.1