SMTL ID : 4rvr.1

Crystal Structure of the bromodomain of human BAZ2B in complex WITH GSK2801

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x 3WQ: 1-{1-[2-(methylsulfonyl)phenyl]-7-propoxyindolizin-3-yl}ethanone(Non-covalent)

3WQ.1: 11 residues within 4Å: Chain A: W.32, P.33, F.34, L.36, P.37, V.38, N.39, L.42, V.43, N.89, I.95 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.32, A:P.33, A:F.34, A:V.38, A:V.43 Hydrogen bonds: A:N.89

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: H.28, E.29, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.29, A:Y.105, A:Y.105 EDO.3: 4 residues within 4Å: Chain A: R.9, T.113, F.114, S.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:S.117 EDO.4: 2 residues within 4Å: Chain A: K.8, R.9 No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: T.23, R.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.23 EDO.6: 4 residues within 4Å: Chain A: L.40, K.41, V.43, P.44 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.40, A:L.40, A:K.47 EDO.7: 2 residues within 4Å: Chain A: K.115, S.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B. J.Med.Chem. (2016)

Release Date

2014-12-10

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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