SMTL ID : 4tyt.1

Crystal Structure of BcII metallo-beta-lactamase in complex with ML302F

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.90, R.91, C.168, H.210 Ligands: ZN.2, S3C.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.90, A:C.168, A:H.210 ZN.2: 5 residues within 4Å: Chain A: H.86, H.88, H.149 Ligands: ZN.1, S3C.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.86, A:H.88, A:H.149

1 x S3C: (2Z)-2-sulfanyl-3-(2,3,6-trichlorophenyl)prop-2-enoic acid(Non-covalent)

S3C.3: 12 residues within 4Å: Chain A: W.59, H.86, H.88, D.90, H.149, C.168, K.171, N.180, D.183, H.210 Ligands: ZN.1, ZN.2 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.171, A:K.171 Salt bridges: A:H.149, A:K.171, A:H.210 pi-Stacking: A:H.88 Halogen bonds: A:N.180, A:D.183

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.139, Q.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.160 Salt bridges: A:K.139

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: K.65, E.100, R.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.65, A:E.100, A:R.101 Water bridges: A:E.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brem, J. et al., Rhodanine hydrolysis leads to potent thioenolate mediated metallo-beta-lactamase inhibition. Nat.Chem. (2014)

Release Date

2014-11-26

Peptides

Beta-lactamase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase 2

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