SMTL ID : 6f2n.1

Crystal structure of BCII Metallo-beta-lactamase in complex with KDU197

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.90, C.168, H.210 Ligands: ZN.2, CF8.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.90, A:C.168, A:H.210, CF8.4 ZN.2: 6 residues within 4Å: Chain A: H.86, H.88, D.90, H.149 Ligands: ZN.1, CF8.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.86, A:H.88, A:H.149

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.139, Q.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.160 Salt bridges: A:K.139

1 x CF8: (~{Z})-3-[2-(naphthalen-2-ylmethyl)phenyl]-2-sulfanyl-prop-2-enoic acid(Non-covalent)

CF8.4: 12 residues within 4Å: Chain A: V.39, W.59, H.86, H.88, D.90, H.149, C.168, K.171, N.180, H.210 Ligands: ZN.1, ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.39, A:W.59, A:N.180 Water bridges: A:K.171, A:K.171, A:K.171, A:N.180 Salt bridges: A:H.149, A:K.171, A:H.210 pi-Stacking: A:H.88, A:H.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, D. et al., Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-beta-lactamases. Bioorg. Med. Chem. (2018)

Release Date

2018-10-03

Peptides

Metallo-beta-lactamase type 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase type 2

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