SMTL ID : 5fqb.1

Crystal Structure of Bacillus cereus Metallo-Beta-Lactamase with 2C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.90, C.168, H.210 Ligands: OK3.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.90, A:C.168, A:H.210, H2O.3 ZN.2: 4 residues within 4Å: Chain A: H.86, H.88, H.149 Ligands: OK3.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.86, A:H.88, A:H.149, H2O.3

1 x OK3: (4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid(Non-covalent)

OK3.3: 16 residues within 4Å: Chain A: F.34, W.59, H.86, H.88, A.89, D.90, H.149, C.168, K.171, L.178, G.179, N.180, D.183, H.210 Ligands: ZN.1, ZN.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.34, A:W.59, A:N.180 Hydrogen bonds: A:A.89, A:D.90, A:N.180, A:N.180, A:D.183 Water bridges: A:K.171, A:K.171, A:K.171 Salt bridges: A:H.149, A:K.171, A:H.210 pi-Stacking: A:F.34, A:H.88

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.139, Q.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.160 Salt bridges: A:K.139

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: E.100, R.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.65, A:E.100, A:R.101, A:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brem, J. et al., Structural basis of metallo-beta-lactamase, serine-beta-lactamase and penicillin-binding protein inhibition by cyclic boronates. Nat Commun (2016)

Release Date

2016-08-10

Peptides

BETA-LACTAMASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-LACTAMASE 2

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