SMTL ID : 4u0u.1

Wild type eukaryotic fic domain containing protein with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

homo-dimer

Ligands

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 6 residues within 4Å: Chain A: W.236, L.253, Y.256, K.257, Y.260 Ligands: PG4.2 No protein-ligand interaction detected (PLIP) PG4.2: 3 residues within 4Å: Chain A: Y.256, A.305 Ligands: PG4.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.256, A:A.305 PG4.5: 6 residues within 4Å: Chain B: W.236, L.253, Y.256, K.257, Y.260, I.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.257

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 15 residues within 4Å: Chain A: E.133, V.215, H.218, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, N.306 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.133, A:E.133, A:D.266, A:G.267, A:N.268, A:N.268, A:G.269, A:R.270, A:R.273, A:R.273, A:Y.298, A:N.306 Salt bridges: A:H.262, A:R.270 ADP.6: 16 residues within 4Å: Chain B: E.133, V.215, H.218, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, N.306 Ligands: MG.7 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.133, B:D.266, B:G.267, B:N.268, B:N.268, B:G.269, B:R.270, B:R.273, B:R.273, B:Y.298, B:Y.298, B:Y.299, B:N.306 Salt bridges: B:H.262, B:R.270

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: D.266 Ligands: ADP.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.266, H2O.4 MG.7: 3 residues within 4Å: Chain B: D.266, R.270 Ligands: ADP.6 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.266, H2O.6, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunney, T.D. et al., Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure (2014)

Release Date

2014-12-10

Peptides

Adenosine monophosphate-protein transferase FICD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosine monophosphate-protein transferase FICD

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