SMTL ID : 4u6z.1

HsMetAP(F309M) in complex with 1-amino-2-propylpentyl)phosphonic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 7 residues within 4Å: Chain A: D.140, T.142, D.151, E.247, E.278 Ligands: CO.2, Q07.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.140, A:D.140, A:D.151, A:E.278 CO.2: 7 residues within 4Å: Chain A: D.151, H.214, T.245, E.247, E.278 Ligands: CO.1, Q07.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.151, A:H.214, A:E.247, A:E.278

1 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: S.116, V.117, N.118, V.120, S.274 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.116, A:N.118, A:V.120, A:S.274, H2O.8

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: L.7, T.83, T.115, S.116, V.117, V.120, I.125, P.126, D.127, R.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.117, A:I.125 Water bridges: A:I.125, A:R.129, A:R.129

1 x Q07: [(1R,2S)-1-amino-2-methylpentyl]phosphonic acid(Non-covalent)

Q07.5: 15 residues within 4Å: Chain A: Y.106, F.109, C.114, H.123, D.140, T.142, D.151, H.214, M.220, H.221, E.247, W.264, E.278 Ligands: CO.1, CO.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.106, A:F.109, A:W.264 Hydrogen bonds: A:E.247, A:E.247 Water bridges: A:D.140, A:T.142, A:N.153, A:Q.276, A:Q.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arya, T. et al., Identification of the Molecular Basis of Inhibitor Selectivity between the Human and Streptococcal Type I Methionine Aminopeptidases. J.Med.Chem. (2015)

Release Date

2015-04-15

Peptides

Methionine aminopeptidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1

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