SMTL ID : 4u73.1

HsMetAP(F309M) IN COMPLEX WITH (amino(phenyl)methyl)phosphonic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 7 residues within 4Å: Chain A: D.151, H.214, T.245, E.247, E.278 Ligands: CO.2, Q02.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.151, A:H.214, A:E.247, A:E.278, Q02.4 CO.2: 7 residues within 4Å: Chain A: D.140, T.142, D.151, E.247, E.278 Ligands: CO.1, Q02.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.140, A:D.140, A:D.151, A:E.278

1 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: S.116, V.117, N.118, V.120, S.274 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.118, A:V.120, A:S.274, H2O.10

1 x Q02: [(R)-amino(phenyl)methyl]phosphonic acid(Non-covalent)

Q02.4: 12 residues within 4Å: Chain A: P.103, Y.106, H.123, D.140, T.142, D.151, H.214, H.221, E.247, E.278 Ligands: CO.1, CO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.103, A:P.103, A:Y.106 Hydrogen bonds: A:E.247 Water bridges: A:H.123, A:N.153, A:H.221, A:Q.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arya, T. et al., Identification of the Molecular Basis of Inhibitor Selectivity between the Human and Streptococcal Type I Methionine Aminopeptidases. J.Med.Chem. (2015)

Release Date

2015-03-25

Peptides

Methionine aminopeptidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1

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