SMTL ID : 4un5.1

Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: U.52 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: A.67, U.68 Chain B: T.1106 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.1106, H2O.8, H2O.9 MG.3: 1 residues within 4Å: Chain A: G.23 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: G.23 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: L.627, T.628, F.630, Y.660 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.627, B:T.628, B:F.630, B:Y.660, H2O.19 MG.6: 3 residues within 4Å: Chain A: A.70 Chain B: Q.1354, S.1355 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Q.1354, H2O.9 MG.7: 3 residues within 4Å: Chain B: I.230, L.233, E.236 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:I.230, B:L.233, B:E.236 MG.8: 3 residues within 4Å: Chain B: E.588, R.590, N.592 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.588, B:R.590

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anders, C. et al., Structural Basis of Pam-Dependent Target DNA Recognition by the Cas9 Endonuclease. Nature (2014)

Release Date

2014-07-23

Peptides

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1

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