SMTL ID : 4unr.1 (1 other biounit)

Mtb TMK in complex with compound 23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: L.108 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:L.108, H2O.4, H2O.4, H2O.4, H2O.5

1 x QZE: 4-[3-cyano-2-oxo-7-(1H-pyrazol-4-yl)-5,6-dihydro-1H-benzo[h]quinolin-4-yl]benzoic acid(Non-covalent)

QZE.2: 14 residues within 4Å: Chain A: D.9, P.37, Y.39, L.52, V.63, M.66, F.70, R.74, R.95, S.99, N.100, Y.103, S.104, R.107 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.37, A:V.63, A:M.66, A:F.70, A:Y.103, A:Y.103 Hydrogen bonds: A:R.74, A:R.74, A:N.100, A:R.107 Water bridges: A:R.95, A:R.95, A:R.107 Salt bridges: A:R.95 pi-Stacking: A:Y.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naik, M. et al., Structure Guided Lead Generation for M. Tuberculosis Thymidylate Kinase (Mtb Tmk): Discovery of 3-Cyanopyridone and 1,6-Naphthyridin-2-One as Potent Inhibitors. J.Med.Chem. (2015)

Release Date

2015-06-17

Peptides

Thymidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thymidylate kinase

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