SMTL ID : 4uns.2 (1 other biounit)

Mtb TMK in complex with compound 40

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x QZ3: N-[4-(3-CYANO-7-ETHYL-5-METHYL-2-OXO-1H-1,6-NAPHTHYRIDIN-4-YL)PHENYL]METHANESULFONAMIDE(Non-covalent)

QZ3.1: 13 residues within 4Å: Chain A: D.9, F.36, P.37, Y.39, M.66, F.70, R.74, R.95, S.99, N.100, Y.103, S.104, R.107 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.37, A:M.66, A:F.70, A:Y.103, A:R.107 Hydrogen bonds: A:D.9, A:R.74, A:R.74, A:N.100 Water bridges: A:D.9, A:R.95, A:R.95 pi-Stacking: A:F.70, A:Y.103

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: L.108 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naik, M. et al., Structure Guided Lead Generation for M. Tuberculosis Thymidylate Kinase (Mtb Tmk): Discovery of 3-Cyanopyridone and 1,6-Naphthyridin-2-One as Potent Inhibitors. J.Med.Chem. (2015)

Release Date

2015-06-17

Peptides

THYMIDYLATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

THYMIDYLATE KINASE

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