SMTL ID : 4utv.2 (1 other biounit)

Crystal structure of zebrafish Sirtuin 5 in complex with 3-phenyl- succinylated CPS1-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.139, C.142, C.180, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.180, A:C.185

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 12 residues within 4Å: Chain A: A.55, A.59, Y.75, R.78, I.115, H.131, V.194, W.195, F.196, E.198, L.200, Y.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.198 Salt bridges: A:R.78

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: R.121, A.122 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: D.201, D.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.201, A:D.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roessler, C. et al., Chemical Probing of the Human Sirtuin 5 Active Site Reveals its Substrate Acyl Specificity and Peptide-Based Inhibitors. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-08-20

Peptides

NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL

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