SMTL ID : 5ojo.2 (1 other biounit)

Sirtuin 5 from Danio rerio in complex with 3-hydroxy-3-methylglutaryl-CPS1 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 11 residues within 4Å: Chain A: A.55, A.59, Y.75, R.78, H.131, V.194, W.195, F.196, E.198, L.200, Y.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.228 Salt bridges: A:R.78

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.139, C.142, C.180, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.180, A:C.185

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: D.201, D.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.203, A:D.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pannek, M. et al., Crystal structures of the mitochondrial deacylase Sirtuin 4 reveal isoform-specific acyl recognition and regulation features. Nat Commun (2017)

Release Date

2017-11-29

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-dependent protein deacylase sirtuin-5, mitochondrial

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